RNA id: TU37014


Basic Information

Item Value
RNA id TU37014
length 1514
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G27819
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 16966545 ~ 17026325 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTGGACtttattacaaaatttcatATTTACATCTGGTTTGAGTGTGTAGGCTTTTCATACGGTAAATATgcacacgcaaataaaacatgcaaactTTTCACAGAGATCACGGTTGGCAAAAACAAAACCAGGCAGTATAATTTACATTGTGTGTTGTGCGTTTGAATAAGGGTTGCTGATAAACAGCACACCAACTGTAACTGACTTGTTAACCATTATTGAAGTACAATCTCACCCTGTGTTGAAATCATGGAAATGAGTGTAGGAGCATGGAAATGAGACAGCACCTCTGGCACTTGTCAAATCAAACTCAATCATGCAAAACTACTAGGGACGAGACTAGTTTGCATTTTTGACTTAGTTTTTCAGTCCTCTTAACACAGTTCAGCCTGCTCCAGTTGTAGGTAActtatgtttttgtttagtaTGAGAGAAACAATGTtttaactagggctgtcaaaattaatgcCATCAAACGCACGTTCTGGGCTTCGGGCCGCTCCATAGTTTGGGCAATCAGGCGTCCTGCATCACCCTGTCGGGGTTCAAATTCGCTAGCTCTACTTTATCCCGCTTATTACGCAGCTTTTTACACGGCTACGCATACAGAGGTACCCCACCCCGCTGATGACGGCTGCGTCCCGGTCGAGACGGTTAACTTTATCGCTGAGAAGCATGGCTCTCCAAAGAATCTTCTAGACagtatttgtcattgttttggattgttgcaataataaacatttgcataaagcaagcACATTTGTCGGctcccatgttgataagagcattaaaaacttgaaaaaaatatacgtagaacagatacaaaaaaaaaaattgtgattaGTTTGTGATTAATGCCCATCTCGTTCCCACAGTCCAAGGGGACATCTTCATATTGCTTGCTTTATTCAACCATGAGCTAAAACTCAGAGATTTCATTTGACAACGAGAAAAGCACAGCGTCTACCCTTCCAGCAACTGGATCTGGAAATTCTTTTAGCCTTTTTGCTTTATAAATGATTTTGAAGATTATATCAGTAATCCAAATAGTAGGCGATTAGTTTTCTGTTTAtcgactaatcatttcagcctTATGTAAAATAGCAATATTTTTTCCTAGAAAACCTCTATTTGCATATCAAGAGACCACACATTGGGCCTCTCAGTCACCTCCAGCTGGAAGGAGAGTTGGGTTGGAAGACTGTTGGGTGTTTCGGGGACTTTAAACTAAGGTATATATGTTGAATCACATAGGCAAACCTCTACCGTGTGGGTTTCTGGACTCAACCTATTTTCTGATCTAGCTGCTGTCGAAAGCTGCCAGACTCTGATGCTCTCCGAATATCCCAGAGACTTTAATGACAAGAACACCACAGCAGCACGGCCCCATTCACACTGTGGGGAGATTGATCACCTGCCATGTATTCGCCCCTATAAttaaagtcttttttcctgtgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37004 lncRNA upstream 16614 16872015 ~ 16949931 (+) False G27810
TU37003 lncRNA upstream 16614 16948539 ~ 16949931 (+) True G27810
XR_005638827.1 lncRNA upstream 158764 16730564 ~ 16807781 (+) True LOC120556216
XR_005638865.1 lncRNA upstream 265723 16698971 ~ 16700822 (+) True LOC120556471
XR_005638866.1 lncRNA upstream 265723 16698971 ~ 16700822 (+) False LOC120556471
XR_005638859.1 lncRNA downstream 44225 17070550 ~ 17077793 (+) True LOC120556428
TU37037 lncRNA downstream 145930 17172255 ~ 17172471 (+) True G27840
TU37093 lncRNA downstream 266390 17292715 ~ 17294951 (+) True G27877
TU37095 lncRNA downstream 287563 17313888 ~ 17314090 (+) True G27879
TU37100 lncRNA downstream 355054 17381379 ~ 17465644 (+) True G27884
XM_039795996.1 mRNA upstream 239854 16701035 ~ 16726691 (+) False LOC120556405
XM_039795865.1 mRNA downstream 471095 17497420 ~ 17505106 (+) True slc39a1
XM_039795867.1 mRNA downstream 471095 17497420 ~ 17505106 (+) False slc39a1
XM_039796020.1 mRNA downstream 481780 17508105 ~ 17513164 (+) True rlbp1a
XM_039795726.1 mRNA downstream 508502 17534827 ~ 17548420 (+) False LOC120556258
XM_039795725.1 mRNA downstream 508504 17534829 ~ 17548419 (+) True LOC120556258
TU36678 other upstream 1480124 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 1520153 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 3728726 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 3856206 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 4934817 12031621 ~ 12031728 (+) True LOC120556595
XR_005638756.1 other downstream 698223 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 1535570 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 2460921 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 2471413 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 2471768 19498093 ~ 19498224 (+) True LOC120556586

Expression Profile