RNA id: XM_039795989.1


Basic Information

Item Value
RNA id XM_039795989.1
length 5100
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC120556401
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 17193513 ~ 17284509 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCTAGACAGGCAGCTCACTTTAAAGCCTAATTACCGACCCACCGTGAGATAATCGCTTCTGACAGCAACCCCTCTCGCCTCACATCCTGTCCCGTCCGTCAGCTACTAACTGGGAGACAACCCAAAATGACACCCGacctctccttccctccctttcCTTTCTCTTGGCATCTTTAACTTTATTCCCCCGTTCTTCTCATGGGAACCAACCCCCCCGGCTCTCACACTGACCCGGGACAGGTCTTGCGTATTTTCTGTGTTGtgcagtattttatttatttttaattgttatttcttcttattttttaattattatatttttacaaaTTGTTTGGATTTCCATAAACGGGCGTGTGAGTCACTGTCACTCGGGAGATGTTGTCAtatgattttaatttaatatgcatttttattattcttCTCGGCCAGCAGCGCGATTTCTCAAAAAAGGTACAGTTCAGTTGTTTGTCTAGAAACGCCTCTGTGTATTTTCTTGGGAGCTGACAGGAGGAACACTTAATAATaaggacaaaaaaacacacGGCTAATTAATATGGGCATGACTCCTGGCGATTTAATGTAGGAATGAATTCAGGGTGGATTGCATTCCTGTTCCTCAACACGTCACTGGCGTAAGTTCAAGTGATTAGTTGACGCATTACTGGATCATCAATTATTGATTAGCTCACAGGTACTTTATACATGAATTTATATACCATTAAGTTAGCTGgaatccagttttttttttaatcaaactgTTAGTCAGATAACATTGACGTGTTGCTGCAGAAATCATCTCTTGTATTGTTGGCAGGTCACAGATGGATCAGGTCAGTCAGTCGGTCCACTTTGGTCCAAATGTAATATCTCAAAAACTATCGGATGGATTACCATGAAACCTTGCACCGTCAtgcatggtccccagaggatgagtcctactgactttggtgatcctcagacttcctctagtgccaccatcaggtcaaaatgttggtttgtccaatactttaaGGCAGCAGAACTCAtcacattcccatcagccttagcTGTACTTCATGTTAAGTGATAATTAGCACTTAAGCTAGCTAACATGCTagactaagatggtgaacattatACCTCAtaaacgttagcatgctagcgttgcGAGCACGTTAGCACCCTGACGTGAGCATCGAGCTGGTCGGTAGAGTAAAACAGCTTCGTATTTCTATTAGAACAGGTGCTGCTTTGCTTTCAGAGCGGCTGATCAAATGCATGGGTCTGAAATGTCCTCTGCTATTATCCCTGTCCAAAGAAAACaatgtatatacatttaaaatttaattttcCTGATACTTTCATGGGTTGAGAGAAATCTCCTATTTATTACGCTAAATAAACCACTTGAAAAGCTCCGTTTAATTGGTGAAAATGTGTGGTCGCAGAGCAGAAAGCACGTTTTTCTTAGCTTGTGAAAAGTAGACATTTCAACGACGCGTGGTTTTAACAGAACAGCGATGCTACTGCACGGAACTGGATTCCAGCTAGCTCGGTGGCATCTGAATTTAACGTACGACCAAACTTTGAGTTCATTAACCGTTGATCCATTGAGTGTTCTCTCACGAACTCACAGTGACTTGATCATATTGAGGAAGAGGAATTCGTGGCCCATCCTGCATTCATTCATGCATCAAATGACCATGACTCATGTTATGTATTAGTTCTGCATTTACTTACAGCGTGTTTGTACCTCCATTATAAAGTGTCGCCCTGGCTTTCTACACCGATGATGAAGCTGTTGATCCTTTAGTTAACCATGGTGTTAGTGAACAATTGAATACCAATCACCAGTGTTTGGATGCTTGTTAAGGTGGTCACAGTTTTCTCAAACacagtttaatttatttaagaTTCTTTCCCCACGCTTGTCATGAGACGGTGCAGCAGATGAGGCACATGATGTGAGAGAGCGGACCGCGTTGAATGTGTTTCTGTTGAAGTGCTCTATACATACTGGGGTCTATATGGGATTGCCGAAAGTCAAACCCTCCCCCAACTCCCAAGTTCATAAAGTTAAGTGACCACAGTTCCACCCTGTGGTTCACAGTTGTTAGTTTTCCGAGGGAAAAGCtgggggagtttttttttttttgttagaaaATATCAGATTGCATGCAGGGATGGATAAGCACAGGGCCGTTGCCATCTCAATTCCTCTCCAACTTGAGTCACACACAGATGTGAACATGTGCGGAGTATATGTAGAGCATTTTTGGCTGCAGCATATGTGTTTGCAGTTGTGAGGACACTGGGAATAAGGCCACTATTATCAGTCGTTACTCTTAAAGGTGTTTTCAAAAATCTCCACAGGCAACCGTGACGAGCAGCTCAACACTTGGCTGCCATGACCTAAATGATAGATAAAAGGGAAAGTCAACAATGTGTATATTATGTCTGTATGGAAACCTGAAAGTTCAGATCCAATCGTGGGTGTTTGATGTCCGTTTGTATGCTTTTTGTGTGTCGATTCAGAGCGAGagaataaattaatttatatattttttagaaaatgaaagctgtactattattaaagaaaaaaaaaaaaaaaggactgtgGCCAATAAAGAGTCTTACACGACAGAAATAATCTCAAAGTCAGACTCAAGTCGACATCTGCACTCACTGCCTTAACATATTCACAGGTTCTGTTTCACGGCTCCAATCcgagaaaaatcataaaaaggctTTTTCGAGGAGGGCAAGGAGAAGACGGTGTACAGTAGACCCTTGTCAGTTTGTACAAATATActaagtgagaaaaaaaaaaatatttattacctGCATTGGAAGACATTGTTTACTTATTGAATGTTACCTGTTTATGTAGAAAAGTTTAGATGTAATAAAATGCATTGTgctatttctttgtgtgttttcccttATTTGGAACGATGGGGCCTGGGGGAACgtgttgacattttttaacagcCTGTTACACTTGGAAATGAACACTGGGTGGCAGTCGTTTTCATCCAACTTTCCCCCCTGCTTTGATGATACAAATCCAATTACGCAcgctctgtcagctctagagGGTGACTTCCTGGTTGTGACACTAGCTTTATATAACATGAACATCTGCAATTATTGACTACACttttatttttggatttaaaGTGATGGGGAAGCCTTGCGCTCCGAGGAGCCTGCGTTACGCACAAGCCATCTGTCCTAATGCGCGCCAATAAACACCTCAACCCCGCCATTCCTGTCATGCTGTCAGAGAAGAGAAGTGATGTTGGATGATGGTGCGCGTTGGAGAGGATAGGAGGGGAGAGGACAGCAGGGTGGGGTGGACACAGACGGAGTAGCCTAGATGGTATGGCATCATGTACTGAAGTGGCACTCCAAGATCCAGCTCTATTTGGACAGAAATGTTTTAATCTGTTTTAAGTATAGACTCCTCACTGACGAGATTATCTGTGTAAAGTGTAGCCAACGTGAGCTGCTGACATTATGAATGAAGAAAACGAGAGCGTTTGTTTGAACGGGTCACTGATGGGGCGGGAATGCTTCAGCAACCTGGAGGACATCGACGTGACCGCTGACGGGAGCCCGGTTCTGAGGTTCCTCATCTGCCTTGTTTATTCTGTTGTATGCGCTGCGGGTCTGATGGGCAACCTGCTGGTCATCTTCTTCATCAGGGTCAAACAAGAGAGGAAGAAGTCCACGGTGAACTTGTTCGTGCTCAACTTGGCAGTGACGGACTTGCAGTTCGTGCTCACTCTGCCCTTCTGGGCCGTGGACACCGCGCTGGACTTCAGCTGGCCGTTTGGAGACGCCATGTGCAAAATCATCCTCTCGGTCACCGTGATGAACATGTACGCCAGCGTGTTTTTTCTCACTGCCATGAGTGTGACCCGCTACTGCTCAGTCGCCTCGGCTCTGAAGAGCAGAACCAGACAGAAGTCCTGTCCCGCCAAATGGACCTGCGCAATCATTTGGACACTGGCGACTCTGGCGACTGCGCCCACGTCCATTTTCTCCACTGTCAGCAACGTAACTGGAGAAAAACTCTGTTTGCTGAGGTTTCCTGGTGGTCAGTACTGGTTGGCAGTTTATCACATACAGAAGCTACTTCTTGGCTTTGTGTTGCCGATGTCCATCGTGTCCATCAGCTACGTAATGCTGCTGCGTTTCGTTCGCAATCGGACTATGAAAACAAGCAACCCCAAACGGAGATGCCAAGTTACAAAATCTATCACCATCGTCGTGTTGTCCTTCTTCCTGTGCTGGATGCCGAACCATGCCATCACCTTGTGGAGCGTGCTGGTCAAACTGAACGTTGCAAACTGGGACAAAGCCTATTACATAGTCCACACGTATGTGTTCCCTCTGACCGTCTGTTTGGCTCACACCAACAGCTGCCTGAACCCGATTATTTACTGCCTCATGAGGAAGGAGTTCAGGAACAAACTGAGAAGTCTGATACACGGAGGATAATTGTTTCGGAACTTTTGAGAATGAAGTGATGACAAACAGTAACGCGAGTGCGCACGGCTCTGGAGTGAGAGAGCAGACCTGTCGCAAAGCACAATGAGAACAAGCACCATCACGTCAAGACTATTTACTCCATTCTGCTCATTGAAAAGTGGGACTTGCATCAGCGCTTCTTGTCTTTGGGGGCTTGCGTAATGTGGCTAATTTCAATAGAGAAACAGCTGTATCTGGTTTTGGGCTTCACGCGTAATTGCTAATTTTGTGTAAGAATATTACAATTATGCGCACCGTGGCACTGCGTGTTAAATAACCATTAGGTGTGGTGTGTCTCTAGGCTTCAGTAAGTGACTATGTGTGCGTAATTGCGCATTAGTGTGCTCGCGTTATAACCGAACCAGTGAAATGTTGCTgcgcgctttttttttttttacacccatCTATGAATGTTTTTGCAACCAGTGCTTGTACATTAGGTGTGTTTACCAGACAATCCCGGATGCAAACGCCACCTCCCTCCACCATCACAGGTCATGTGTTTAAGTTATTGACTACAGCGTGACAAAATCAATCGTTTGGGCACCGGAAACAACgaaatgtgtgaaatgtgaTTGTTGTAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004982 N-formyl peptide receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37069 lncRNA downstream 71933 17021921 ~ 17121580 (-) True G27865
TU36964 lncRNA downstream 550704 16638917 ~ 16642809 (-) True G27775
TU36957 lncRNA downstream 634508 16558638 ~ 16559005 (-) True G27768
TU36956 lncRNA downstream 634992 16557533 ~ 16558521 (-) True G27767
TU36913 lncRNA downstream 783577 16409470 ~ 16409936 (-) True G27729
TU37127 lncRNA upstream 94809 17293421 ~ 17294886 (-) True G27909
TU37151 lncRNA upstream 309511 17508123 ~ 17510825 (-) False G27925
TU37227 lncRNA upstream 365061 17563673 ~ 17605770 (-) False G27983
TU37226 lncRNA upstream 365136 17563748 ~ 17566267 (-) True G27983
TU37229 lncRNA upstream 365136 17563748 ~ 17566267 (-) False G27983
XM_039795781.1 mRNA downstream 7773 17173886 ~ 17185740 (-) False LOC120556297
XM_039795779.1 mRNA downstream 7773 17173886 ~ 17185740 (-) False LOC120556297
XM_039795782.1 mRNA downstream 8043 17173886 ~ 17185470 (-) True LOC120556297
XM_039795343.1 mRNA downstream 21044 17107473 ~ 17172469 (-) False uacab
XM_039795344.1 mRNA downstream 21044 17115639 ~ 17172469 (-) False uacab
XM_039795828.1 mRNA upstream 1563 17200175 ~ 17263062 (-) True pias1a
XM_039796253.1 mRNA upstream 76366 17274978 ~ 17283831 (-) False skor1a
XM_039796252.1 mRNA upstream 76366 17274978 ~ 17283831 (-) False skor1a
XM_039796251.1 mRNA upstream 76366 17274978 ~ 17283831 (-) False skor1a
XM_039796248.1 mRNA upstream 76366 17274978 ~ 17283831 (-) True skor1a
XR_005638870.1 other downstream 1553553 15639769 ~ 15639960 (-) True LOC120556584
TU36517 other downstream 2349608 14842713 ~ 14843905 (-) True G27420
TU36388 other downstream 2723168 14469758 ~ 14470345 (-) True G27321
XR_005638877.1 other downstream 3904249 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 4097747 13069996 ~ 13095766 (-) True G27075
TU37150 other upstream 309511 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 311338 17509950 ~ 17513168 (-) False G27925
TU37149 other upstream 311516 17510128 ~ 17513168 (-) True G27925
TU37410 other upstream 1019510 18218122 ~ 18220550 (-) True G28121
TU37599 other upstream 1184093 18382705 ~ 18383642 (-) True G28265

Expression Profile