RNA id: TU37093


Basic Information

Item Value
RNA id TU37093
length 2237
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G27877
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 17292715 ~ 17294951 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCAACACAGATAATTACAGAAAAGGCCATAATCAGCCAGTAATACCACAGCACTAATATTTCTGCTGAGTCCCATCACTGACTTAATGCTTTATGGTTTAGGcaaaaactggaaaaaataaaaagtcacaagctaaaaagtaaaagaaaaaaaaatatttccactGATACTGCAGATTCATAATTAAAAATCACAGTCAATAAGTACATTGCCAAACTATAAAAGACGTGTCTGAGCTTTTTTTTGGCGCTTACATAACATCTGTTCAGAAATAAGaaaccatttttctttttggtttCATTTGAGTTGCaagaatacatttaatatttgcAGTGTGTTCATCAGTAGCCACTACACACTCTTCTTATTTTACACTTATTTACTAGTTTTGCCAGACTGCTAAGTATTTATAGCTTCAGTTACATTTAAGGCCAACATTATGTAAGGTGGATGTCTCACAGATGTGTTAACAGTACGGTAGAATTTAACAGATGAATATAATTAACAATATATGTGGTATAATGTAAAGTACATATTCTATTCAATGCGCAACTGTTGGAAAATCCATGTTGATGTATTTTCGTTACTGGAACTTTTGAGTTCggcaattattattatatatttattttaatttctttaggATAAGGACAAGTTCTTCCCAAAGTTAAGGTAAAACTATATTTATGTACATCAAAGTTAAAAGGCTGTGGCTCAATTTCAGGTTTCTTAGGCAGGAATAATGGCACTAATAAAATGTGTCGTATGGGAAGGATTATGCAAATAGCGCCTCTGCTGGTTGTGCAGTTCACAAATAATGCGTCTTGGAATGATTGATCACAAACTGTATCTGAACTGCTGTGACACAGAATTAAGGACATTGTAATAATCAGCGTTCATCAACAATAATGAGCTGTTGCATATGGAGAAGgattccataaaaaaaaaaagtttcagtttttcaaaattCACCTCAATATGTTCTGAGCACAACCAGTAGAGGGCGCTACAAGAAGTTTCCCTGGCACATCGGAACCCGTTAAATAACGCCAGATTGTGGTGCTGTGTTCAATTCCTCCTGGGAAACAGTAACCTGACAGACAGActccacttactagcttttgcCCAAACTCTCAAATCCATCTTGTGGTCTTCCTAGTTGACCTTAAATTAAGATTTTCTTTTGTAGCATTTTGTAGCAAAAATGCTAAATGAATAGCCCATCCTGGAAATAAGATGCTTGacaatcaaagtgataaaaaaaacagaccaacTGTGGGCTTGTtcgtgtaaaaaaaatacaggaaaTCTTTAGTTCCCAAATAATTAATGAGACGATGGAGCACGTTTGATTGATCtacaaacaacaaaatgtcTTCTCTGTTTCGGCTGATTTACTGTCAAAAGGCCAGTGATTAAAATTAAGCATCCATGTGTCTCCTCATCGTTACAGAGGATAAAGCACTTTGAACAGTGTACTGAAGAAATGACTCATCATATGTATAATAAACTGGGGATTTAAGCCTTTTGGGTTTTGCTGATGTACTGCCGTTACATTCGTTTCCAGTGATGTTCACACTGTACACATCTAGTCACTGTAGGCTGCGTTTACTGTGCCCTTGTGGAAGAAATGGCATTTAATTGCACTTGAGCTCTACACATTTCAATAGCTGCACATAAAGACCTTGCCAAATCCTTTTCGTCACACAACCCAATATGTTAGCCTCCGTCATGAGAGATAAATTTACCATTCGGGTCGTCGGGGGTCTTTGGTGTCAAGTGCACTGCATTAATGTTTTCCCTCTATAGATATCAACTGATCTTATTTGGCAatctaataaaataacatacTTTCTGTACAGTGCATTACATTTCTTGCTAAAGTTACAATTTACTACTTAGGAAGTGGATAAAACGAAATGTTGAAGAGGAAAGTGGAGCAGTTCTCCACTTTCATTCAgcagctgtttgtttttcttagaATCCATTAAGAATAAACTATGGACAAGAAgagaaatgtaacaaaaaccatatctctttctccccttataaactagggatgcaccgatccgactatTTCAGTCCAAATACCGATACCTAGGCTTTGAGTTTCGGCCGATACCGTGTATAAATCCAATACCTGTGTTTATTAATAAGTATCTATAGTGTATACCTCACTGTGTGGAAGTGAATATGATAATTTTTTGTGTAAGGCAACATCAGGCTTGACTTGAATATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37037 lncRNA upstream 120244 17172255 ~ 17172471 (+) True G27840
XR_005638859.1 lncRNA upstream 214922 17070550 ~ 17077793 (+) True LOC120556428
TU37014 lncRNA upstream 266390 16966545 ~ 17026325 (+) True G27819
TU37004 lncRNA upstream 342784 16872015 ~ 16949931 (+) False G27810
TU37003 lncRNA upstream 342784 16948539 ~ 16949931 (+) True G27810
TU37095 lncRNA downstream 18937 17313888 ~ 17314090 (+) True G27879
TU37100 lncRNA downstream 86428 17381379 ~ 17465644 (+) True G27884
TU37112 lncRNA downstream 199797 17494748 ~ 17495773 (+) True G27895
TU37205 lncRNA downstream 443484 17738435 ~ 17743448 (+) False LOC120555788
TU37215 lncRNA downstream 530913 17825864 ~ 17826910 (+) True G27977
XM_039795996.1 mRNA upstream 566024 16701035 ~ 16726691 (+) False LOC120556405
XM_039795865.1 mRNA downstream 202469 17497420 ~ 17505106 (+) True slc39a1
XM_039795867.1 mRNA downstream 202469 17497420 ~ 17505106 (+) False slc39a1
XM_039796020.1 mRNA downstream 213154 17508105 ~ 17513164 (+) True rlbp1a
XM_039795726.1 mRNA downstream 239876 17534827 ~ 17548420 (+) False LOC120556258
XM_039795725.1 mRNA downstream 239878 17534829 ~ 17548419 (+) True LOC120556258
TU36678 other upstream 1806294 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 1846323 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 4054896 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 4182376 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 5260987 12031621 ~ 12031728 (+) True LOC120556595
XR_005638756.1 other downstream 429597 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 1266944 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 2192295 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 2202787 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 2203142 19498093 ~ 19498224 (+) True LOC120556586

Expression Profile