RNA id: TU37205


Basic Information

Item Value
RNA id TU37205
length 2281
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id LOC120555788
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 17724545 ~ 17743448 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGAAAGTCTGGATTGACTTCTGGATATTGCACCGGATGTCCCTTGCCTTGCAATACTGCGTTCGTTTTGGGTACAAACACGGacattgtgcaacaaggcaggcctgcttggttcttttaggggaatgattgtaaagatttacaagaatatgtttatggcatttactctctaactgggacgttttgggactgattggcggtgatacactgTTTTTGGAGGTGAAAATTCTAGCAAGGAACCATCAATAATTGACACAGAATTTGAAGAGGAAATGGGCAGGTGTCCTCTTTgctcagataaaaaaaacacagcaaagtCTGACAGCAGAATTACAGCATATGGCAAAGAACACCAAGCAGttgcaaacaaaaaacaacttttgagcTCATGTTCTCTGAAATTTACCTGTCTGGGAAGAGAATATGGTCAACTGAAGTTGGtcataaacacaacactgtaCCACTTCACCTGCTCTCTAAGAACACATCGCAAGAAGAAGCACAGTGGAGCCTGCTCTTGAAGAACACATTGCAAGAAAAAACACAGTCTGAAGTAGAGAACAAAGAGCTGAAGAAACTTCTGAACTCCACTTAGTAAAACTTCACTCTTCTGGGAAGTGAGTATGGCCAACTGAAGCTGCTCATTAACGCAACACGGTGCAACTTCACCTTTTTGTCTGCTGAAACTACACAGCTGAGCCTGCTCTTGACGAACACATCACAAGAAAAAGCACAGTTGCAAGTGGAGAACACAGAGCTGAACATGTTTCTAAATTCAACACTGGAAAACTGACCTTGTGGAAGAGGAGAACAGGCAACTGAACCTGCTTCTGAATGAATTATTGCACAGCATCACCATGGAGTATGAAACAATGAACAACAATCCTCTATGCAGCTGGCAGCAGAAAGTCAACGCCAGCATTTAATGCTGTTCTTGTTCTCATTTAAATCTGTCCTTCCTCTGGAAATTCTGCAACAAGGACACACTGCAGTGCAGAAGTGGGGAAAAGCTCGCAGGAAGAGCCTTGACAAGAGGCTTGACCTGGCTGTTGTCTTGAATGCCGAAGACAAGGCATTCTTGACCAACATGACTTTTCAGTTTGTACAGCAGCACCCTCAAGAAAACTCTCGGGATCGCGTGGATCGGGTTGCAGGACATGGTGAAGGAGGGTGTCCACTTCTGGGTCAATGGAAACAGAATTCAAAGAATTTTTATATACTGGAATGACCTGGACCCAAAGAAGGCCGTGGCCTCTTGGGACAAAGACCGAGCAGGACAGGACTGTGTTGCCATTGTCCAGTGGAGTCACATTGGACAGGAGAATTACTTAAACTCCTGGGAAGACATAGTTTGTGGTGGTGACCGTGCCTCTTAGTTTGTACTGAACGACAGACCTGCATGTTGTTAAGCTGTGGAGGAAAAGCAACATCTCACTCTCAGGCTGAGTTTGCTGGTGTTTACTCAAAGTCTACATGTAAGCGTAATCTAAGCACCATCGCTGGTGTCGTGAGGGAATTACTTTCGGAATGATTATCTTACATATTAAATTTctcttgtttttatgtttttattcgttatttatttgtgtccccATTTCCTATTctaaaaataacttttcatTCCACTTGTCTGTTGCATTCTGtatgaaaaattaaaatgttctcTGTAACCCAAATCTACAGAACGAGATTTGCAGTTTAGTCTCAGATAAACTGGCAAATACgtaaaaagtaatgtttttatttcccGTAAAGTGTaatcaaatatattcagttctGTAACAGAATAGATGACTGGGCTTTGTAATTTATTGCattttgtttacttattttgGTGGAGTCCAAGGTGGCATTACTGTTTCCTGTAGAATTCAACAGCAAATCAAAGTGCTGCACAAAGACGTGGGATAGTTGATTGACTTAATAGTTGCTGTTCTTTTACAGGCTGGTGTCAATGTTACCAAAGACACATGGAGTCAAGAGTGTTATGTAAGATTcttttgagacacacacaccaatgcacACATGATTAACTGCAGACAGGAGATTGTTCACTTTactgtagtctcacattgccagacctatctccacagcgctccggaggaaggtctggctagtccacacaacattccgggataggagaaaaacgtcctctggtttattggcatttctttaaaccaatcacaatcattgggctgtgctaagctccagacgcaggTACGGTCCCTCTGTAAAATAGCCTAGTCCACATAGGGAGGCGATCtatggaattaaaatggct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37112 lncRNA upstream 242662 17494748 ~ 17495773 (+) True G27895
TU37100 lncRNA upstream 272791 17381379 ~ 17465644 (+) True G27884
TU37095 lncRNA upstream 424345 17313888 ~ 17314090 (+) True G27879
TU37093 lncRNA upstream 443484 17292715 ~ 17294951 (+) True G27877
TU37037 lncRNA upstream 565964 17172255 ~ 17172471 (+) True G27840
TU37215 lncRNA downstream 82416 17825864 ~ 17826910 (+) True G27977
TU37336 lncRNA downstream 128298 17871746 ~ 17876173 (+) True G28066
TU37335 lncRNA downstream 145313 17888761 ~ 17889217 (+) True G28065
TU37334 lncRNA downstream 145402 17888850 ~ 17889217 (+) False G28065
TU37361 lncRNA downstream 175452 17918900 ~ 17919196 (+) True G28083
XM_039794859.1 mRNA upstream 2092 17724548 ~ 17736343 (+) False LOC120555788
XM_039794858.1 mRNA upstream 2092 17724549 ~ 17736343 (+) False LOC120555788
XM_039794860.1 mRNA upstream 2603 17724545 ~ 17735832 (+) False LOC120555788
XM_039794850.1 mRNA upstream 18178 17702303 ~ 17720257 (+) True secisbp2l
XM_039794851.1 mRNA upstream 18178 17702303 ~ 17720257 (+) False secisbp2l
XM_039794856.1 mRNA downstream 18790 17762238 ~ 17823496 (+) True fbn1
XM_039794857.1 mRNA downstream 18797 17762245 ~ 17823496 (+) False fbn1
XM_039795345.1 mRNA downstream 111390 17854838 ~ 17870516 (+) True myef2
XM_039795346.1 mRNA downstream 111390 17854838 ~ 17870516 (+) False myef2
XM_039795255.1 mRNA downstream 142793 17886241 ~ 17888724 (+) True LOC120555992
TU36678 other upstream 2252014 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 2292043 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 4500616 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 4628096 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 5706707 12031621 ~ 12031728 (+) True LOC120556595
TU37478 other downstream 818447 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 1743798 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 1754290 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 1754645 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 1768908 19512356 ~ 19520218 (+) False ercc3

Expression Profile