RNA id: XM_039794860.1


Basic Information

Item Value
RNA id XM_039794860.1
length 1857
RNA type mRNA
GC content 0.52
exon number 13
gene id LOC120555788
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 17724545 ~ 17743448 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCACCGTCATAGAGAGATAGAGGAAGTGAGCGAGAGTCTCtcattcctaaaaaaaaaaaaaaagagaaaagttcATTCATAAAAAAGCTGCACAGTTCTGCTGCGCCTCAGAAAGAAAAGACCGAGGGGAGGAAAGTTGATGTGGAGGTGAAGCCGAGCTGGAAGACTGGCAACTGCCTGAGAAAGTGTATGGGTTGTGTGAGAGTTATGATGGGGGTGTACACAGCATGACTAGAGCAAAGCAGACTGGACTGTAGACTACACAGGACATCCCCTGTCCCACGCTGTGCTCTCCCTTGTCCAGTTCCCTGATTATGAGAGAGCAAACCTTACCCAGGTTCAAATCACAGAAAGGACTCTCACCAGGCATGCTGAAGCGCACCAAATACAGTCGTCTGCGCAACGATTCGCTGACCTCTCTGGAGGATCTGCCCCAAAGAATGCTGCCCCCTAGAGAGGACCTTTGCTTAGACTCTGATTTTGCCCAGCTGGATCCCGGGACGCCTACACATCACGGGCCGTCCACCCTGAGGGACTTCATCCCCCGTGTGGCCAACATCCGATTGCAAAGTCCTATTTCCCTGCGGGGCATGAGGGGACAGACGGACTCAGAGGACAGAACCATTGATGGACACACTGACAGACCCTTGTCCAGAGCAGAGTGGGGCTCAGGGAGATTTTGTAGCCAACCTTCCTTCAATTTGCCCCTATCCACTAATAACTTGGCTCTGCGCTGCACAAAAAGACCCATAACCCTGCATCGGATGGCCAGCCTGCCCTGGACCCCCGGCTGTCCTTGCTCACAACACAGAGACGGTCTCTGTCGTTTGAAGACCTCCTCGGCGGTAGATGACTGTACAGTGGAGGGGACAGCAGACAGAGTGGTTCACCGTCACATCAAGTACATGGGTAGTGTGGAGGTGACCCAGTCCATGAGAACCCTCGACTTTGATACAAGAATGAAAGTCACACGTGAAGCAATCAGCAGACTGTGTGAGAGGACATCAGCCAAGAGAGCAGTGAAAACTAAAAGGCCTGTATGCAAGGGACTGTCTTCTCTTCTGGGTCAAATCAACCTACAGTTTTCTGGGAGCAAGAGCATTCTCACTGTCTCCACAGACAGCGTGACTCTGATTGCTGCCTCCTCCTTACAGAAGATTGCCCACCACCCCATGCAGGCCATTTCATTTGCCTCAGGAGGAGATCCAGACATGGCAGATTACATCGCTTATGTTGCCAAGGACCTCGTCAATCAGAGAGcatGTCACATCCTGGAGTGTCCCCGGGGTTGTGCCGGTGAGGTTATCAACAGCATCGGTCAGGCTTTTGAGACTCGTTTCCGCCAACTTCTCAGCCACACACCATCGCTCCTCTCCAACAATCCCAGGTCAGCAGCAGTGCAAATCTGTCACAAATGGAGCCCGGAGGAGACAATAACAGACCAAAGGTTAGAGCAGGAAGGCGAAGAAGCCAGGAAGCACCGCGACTACTACAATGTGATCCCAGGAAAGACGCCGCCCGCTGGTGGAATAGAGGACCTGCGGATTACAAGAGAGGACAAACAGGATGCTGACATACAAGGGGTTTGTTCATCTCAGCCTGTTTCACTGTGTGAGAACTGCTCCATCACAGAAGAAACTCCAGCTCCACCTGCAGACTCGGTGGTATCGGCGGTCAGTGCTAAACGGTGTACCCCACTCTCTGACACACAGATCCACCTGATCCAGGAGGAAGGCTGGTTCCACGGCAGTAACTTTGTGTCCTTCATCCCAGGTTAGGAAGAGAGCAGGCGGAGTCACTTCTCACCTGTAGTGGGGATTTCCTGGTCAGAGAGAGCAGCTCTGCCTCTCGTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37112 lncRNA upstream 228772 17494748 ~ 17495773 (+) True G27895
TU37100 lncRNA upstream 258901 17381379 ~ 17465644 (+) True G27884
TU37095 lncRNA upstream 410455 17313888 ~ 17314090 (+) True G27879
TU37093 lncRNA upstream 429594 17292715 ~ 17294951 (+) True G27877
TU37037 lncRNA upstream 552074 17172255 ~ 17172471 (+) True G27840
TU37205 lncRNA downstream 2603 17738435 ~ 17743448 (+) False LOC120555788
TU37215 lncRNA downstream 90032 17825864 ~ 17826910 (+) True G27977
TU37336 lncRNA downstream 135914 17871746 ~ 17876173 (+) True G28066
TU37335 lncRNA downstream 152929 17888761 ~ 17889217 (+) True G28065
TU37334 lncRNA downstream 153018 17888850 ~ 17889217 (+) False G28065
XM_039794850.1 mRNA upstream 4288 17702303 ~ 17720257 (+) True secisbp2l
XM_039794851.1 mRNA upstream 4288 17702303 ~ 17720257 (+) False secisbp2l
XM_039794853.1 mRNA upstream 4288 17702303 ~ 17720257 (+) False secisbp2l
XM_039794852.1 mRNA upstream 4977 17702303 ~ 17719568 (+) False secisbp2l
XM_039794854.1 mRNA upstream 4977 17702511 ~ 17719568 (+) False secisbp2l
XM_039794856.1 mRNA downstream 26406 17762238 ~ 17823496 (+) True fbn1
XM_039794857.1 mRNA downstream 26413 17762245 ~ 17823496 (+) False fbn1
XM_039795345.1 mRNA downstream 119006 17854838 ~ 17870516 (+) True myef2
XM_039795346.1 mRNA downstream 119006 17854838 ~ 17870516 (+) False myef2
XM_039795255.1 mRNA downstream 150409 17886241 ~ 17888724 (+) True LOC120555992
TU36678 other upstream 2238124 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 2278153 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 4486726 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 4614206 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 5692817 12031621 ~ 12031728 (+) True LOC120556595
TU37478 other downstream 826063 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 1751414 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 1761906 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 1762261 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 1776524 19512356 ~ 19520218 (+) False ercc3

Expression Profile