RNA id: TU37603


Basic Information

Item Value
RNA id TU37603
length 2450
RNA type TUCP
GC content 0.46
exon number 3
gene id G28269
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18416069 ~ 18420499 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATCTTTGCCAGTAATtttattttgagatattttgtAGAACAGGGGAACCAAtgattaccaaaaaaaaaaaataaaaaaaaaaaaaaagtccataaGTGTTCTACATGCTACACCTTACCTAATTCATCATGCTTGCCTGGAAAAAGTACATAgaaatttaacaaaacaaaaaaaacatacaattaaaaCTGACGTACATTATACTCACcattaactttacttttaatgtacCTCTCTCTTGCCTCCATGcacgcattttttttttttttttaaacattacatttagatAAAAAATTAAGACTTTTAGGCGCTTCTTCAAACCATAAAGCAGATTTTGCATTAAAGACAGAACGCacctataaataaaaaaaaacaaaacaaaaataatgatatCCATTTTGAAAATATCGGTGGAAAATGTAAAGCCTCAACTTCTTTTCGAACATAGATGAATTTGCAACCTACCATAAAACAGAAGAACACTTACGCCCATATAGTGCTGAAATGAAAATGGAAGTCCGTCCCAACTCCTCGATCATCGATAATCACATTGAAATAACACATTTTGATAAAATAAATAGCGCACATCTGCtagaaataaataatgattACTGAAACACCTCACTAATGTTAAATGCTAAAGTGAGACAGATTTCATCTGCGCGACCACTTCATTTCATGGAGAGAGGATGGTCATGTGTGTGTAAAGCACTAGTGCGGCTCCGAGTGTCTCTCGCGGCTGTTACCTTGAGGTAGATAACACATTTACATTAACGCCTACGATAATGGTTGCTGCTGGCATCATGTGTCAGATTACATTACAGTATGAAAGGGTTCAGGAAGCtttcttcagaaaaaaaaaaaaggacatcccaacccccttttttttttattcttcttcttcttttgtatCCCGTCCTAGGAAAAGCTGTTTCAATGCACTTAATAATGCCTACAGCAATGTCAGCGTCTAGCGTCCTTCCTTAGGTCACACCCTAACAGCCAAACCTCGTCTctcgaataaaaaaaaaacgcctcTCCTACCATCCGTCCATCTTTCGTCTAGTTACTTCTCTCCCGCCTTTCCGTTCGTATACAGTACATAAGTGTGCGAGTGACGTGCCAGTTCAGCAATGAGAGCGCAGCAGACGTTCACCCATGAAGGCCTGGTGGTCAAGGCTCAGAGTTAtgaccaacattttttttaaatataataaatcaCCCCTGTCAActcttaaaacaaaataattaaaagtaaccataataataaaaaaaaattatgaaatgaTTCAAGTTCAATAATATAccatattattaaaaaaaactgcctaGATTTTGCACTGTGAGggaggatatatatatttatttttaattaagatGCTTGAAGATGCTGCTGTATGTTTTGTGGGGAATCTGTGGGGAGCATTTGACAGCGCACGGGGTGAGGGACGCCTGGATGGATTTTAGAGGCAAGTCATCGGCGCCGTCAAAGCCAGGCAGGGCCAGAGAGTCCAGCTGCATGTTAAGCACGATCTCCGTGCTCCTGCAGAGGAAGCTGTCGTCCAGCTCTGTCCCCTCCGAGGGCTCCGTCTCCGAGCCGGCCACAGTCTCTCCGGCCCCGTCTTCCTTGCGGCTGAACAGGCGGTCCAGGTAGCTGGTGTAAGTGCTCTCCTTCTGGAGCTGGTCCTCTTTGTGAATGTCCCAGCATGCTTCGTCTATCAGACAGCCGTTCTCCCCGACTCGCTCCCCGGAGCCAAAGCTCTCCCAGGGGCGGGCGGGCCAGGCGCCGTCGCCGACGACGACTCCCAGCCCTCCTCCGCCTAACTGGGCCAGGTTCACCAGGcacttctcctccttctcctgaCTTATGGACTTGGACATGGAGCCCGAGCGGGGAGCCTCCAGCTGGGAAACCGAAGAGTTGAGCTCGTTGAGGAGGCCCACCTCGTGGAGCAGCGCCGCCTCCTGACAGGGCTCCGGCTGCAGGCTCAGTTTAATGGTGCTGGCGATGAAGGAGTCAAAGTCAAAGCCTTGGTTCTGCTGGCTTTGAGGCTTCTCCGTCTGATGCTTCTCCTGCTCGCTGTCCTTCTCCGCCGGACCCTGGGTCTTCTCGGCCTCCTGCAGCGCGATCTGGGCCTTCACCAGCCCGTTCTTCTCGCACTTGCTCTTGGCCTTGCGGTCCGCCTTCTCCTTGCTCTGCTGCTCCTTCCAGTTGGAGATGTCGATGATGAGCTTGGGCTCGTAGTAGTGGTTGACTTCGCTGTCCCTCCAGATGAGGTTGTCCAGGTAGGAGGGCGACACGGCCTTGTAGTTACAGGTGTGGCTACACTGCAAGTCACAGTATTTGTTCTCGTGGTGGTCGTCCTGCCAGGATTGCTCCGGCTGGAACAGAGTGGAGTAATCGAAGGACGGCTCGTCCAGGAACTCCCGATCTCCGTCAGCATATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37601 lncRNA downstream 31370 18385531 ~ 18386608 (-) True G28267
TU37598 lncRNA downstream 35599 18381978 ~ 18382379 (-) True G28264
TU37597 lncRNA downstream 36456 18381179 ~ 18381522 (-) True G28263
TU37575 lncRNA downstream 97373 18310343 ~ 18320605 (-) False LOC120555717
TU37573 lncRNA downstream 107435 18305376 ~ 18310543 (-) True LOC120555717
TU37621 lncRNA upstream 49314 18469813 ~ 18471450 (-) True G28284
TU37628 lncRNA upstream 77350 18497849 ~ 18498089 (-) True G28291
TU37640 lncRNA upstream 121959 18542458 ~ 18558219 (-) False G28302
TU37639 lncRNA upstream 135466 18555965 ~ 18558219 (-) True G28302
TU37650 lncRNA upstream 147602 18568101 ~ 18569077 (-) True G28309
XM_039794635.1 mRNA downstream 57768 18335550 ~ 18360210 (-) False tmod2
XM_039794637.1 mRNA downstream 57781 18335550 ~ 18360197 (-) True tmod2
XM_039794705.1 mRNA downstream 90190 18321428 ~ 18327788 (-) True lysmd2
XM_039795264.1 mRNA downstream 174968 18237855 ~ 18243010 (-) True gldn
XM_039795253.1 mRNA downstream 476507 17920329 ~ 17941471 (-) False sema6dl
XM_039794653.1 mRNA upstream 19083 18439582 ~ 18451019 (-) True usp8
XM_039794654.1 mRNA upstream 20486 18440985 ~ 18451019 (-) False usp8
XM_039794656.1 mRNA upstream 36051 18456550 ~ 18466081 (-) True LOC120555694
XM_039795684.1 mRNA upstream 51215 18471714 ~ 18482023 (-) True LOC120556233
XM_039794523.1 mRNA upstream 154561 18575060 ~ 18584594 (-) True LOC120555642
TU37599 other downstream 34336 18382705 ~ 18383642 (-) True G28265
TU37410 other downstream 197428 18218122 ~ 18220550 (-) True G28121
TU37150 other downstream 904810 17508123 ~ 17513168 (-) False G27925
TU37147 other downstream 904810 17509950 ~ 17513168 (-) False G27925
TU37149 other downstream 904810 17510128 ~ 17513168 (-) True G27925
TU37697 other upstream 298873 18719372 ~ 18720019 (-) True G28345
TU37831 other upstream 639256 19059755 ~ 19062150 (-) False LOC120555695
TU37839 other upstream 703067 19123566 ~ 19126376 (-) True LOC120555836
TU37840 other upstream 703067 19123566 ~ 19126376 (-) False LOC120555836
TU38446 other upstream 3160543 21581042 ~ 21583498 (-) True G28933

Expression Profile