RNA id: TU37621


Basic Information

Item Value
RNA id TU37621
length 1638
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G28284
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18469813 ~ 18471450 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTATCTCTCAAATTTTTCCCCTTTATATTTTCATTAATATCCTCTTCCTGTTTGAGACACAATCTATTATTGTTATACAGCACTCTTTCTACCAAAACTATCAAAACTGGAGAATTTTACAAGACAACTTAATAACGTCCCTTAAATTGTACAATTACAATCGATCCAAAAAAATCTTCCTTTTGCTGGCATTATCTATTCAAATGTCCCTACCACCTGTGATTAAGAGCCATACCCTTCTTCACAGCGCCTTGTCAGCGCTGGAGAAAAGTCTGGCTGCACCCATTATCATTCTGGTAATGGgggaaaaaacgctctgggttggttatatttctatatacgtcttgggcggcactaagcccAGGGTGCAGCAACGGTGCTCTTGCAAAATACTGTAGAtagtggaaggggaggagaatTCTGTCTGAAATAGGTGGCCAATGGCAGGTTTATACCAGTCTCAGTCCATAAATGCAATATTACCCTAAACCATTTTAAAAATGGAATGGCTTCCTGTTGAAAACAAAGTTAAACAGTTAACACGTATTATGGTCTACAATTATTTAACCAAATATTTCAGTATGTTCGGGACTCTAACTCTGAATGCGAGGGCTAGTGTATCTAACCTGAAACATATTCTAAAAAGTAAAGTAGGGAGAAGCACGTTTCTCTcctcactttacttgaggtcaaggaaAATGTTCATGACACAATCATAATGGTCTCATGACATGATGAAATAATTTGATAAGTAGGCCTGCTATGACATATTTATGACCGGCTTGTTGTCATAACACAGAAATTGTTGTCTTGGTTAATGTCAACATCTCAAACAATGCCAACTTTGCATTAAGTTTCATAATTTACTGAgtgacacttaatgacaacagTCATAAACATTCATAAAGACTTGTGTCCACATGTTTATGACCagtgtcatgtctttttatgaccgtgtcatgtcagtcttatgcacacccCTTCAAATGAAGTGTTACAGGGTTGCTTAAGTTAAGGCAATGGCTAAAGTGCCAGACCTGTAAGCGCGGTATATAGAATATATGCAATCATTATAAATCTGAACAAAAGTGTCAGTCCAGCTGCAATAAGAGTGCTAAAAAAGTTTCAACTTTCACATCACACGACAGATGCATTTACTGTAGACCCAAAGAACAAGTTACGCCTCTTGAACTTTGACTGATTTATTCATCTGGGGGAGTAACAAAAGAGTTCACAAATAAATTCTCCAACGGCtgacaaaagtgaaaaagtaTCACCTTTCTGTGAATGCCTACTTTTTAAGCTTACTGATCGTCCTCTCTTGTAATCCTATTTTATCTTTGTGTTATCATCATGTTGTCAGAACAAGCTTCCTTGCAGATGATTTAACATTAAAGGGCCATTGTCTTGAAGATAGGCGAAGGTATGTTAACATTAAATGACCATTGTACTCAGGAAAAGCTCAAGTATTAGACATGATAGTAAATAAGAGACTGAATCAACCTTGTCATGAGGTCAGAAATTGTTGTTCTTTTGTTCACTTGATGACATTTAAGGAAAGACACTCTGAAAGTCAGGAGAGAACACAAATTCCAGGTCTTATCTCCCTGCTGCATGAAATAAATAGATTAATCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37604 lncRNA downstream 49314 18416069 ~ 18420499 (-) False G28269
TU37601 lncRNA downstream 83205 18385531 ~ 18386608 (-) True G28267
TU37598 lncRNA downstream 87434 18381978 ~ 18382379 (-) True G28264
TU37597 lncRNA downstream 88291 18381179 ~ 18381522 (-) True G28263
TU37575 lncRNA downstream 149208 18310343 ~ 18320605 (-) False LOC120555717
TU37628 lncRNA upstream 26399 18497849 ~ 18498089 (-) True G28291
TU37640 lncRNA upstream 71008 18542458 ~ 18558219 (-) False G28302
TU37639 lncRNA upstream 84515 18555965 ~ 18558219 (-) True G28302
TU37650 lncRNA upstream 96651 18568101 ~ 18569077 (-) True G28309
TU37674 lncRNA upstream 178601 18650051 ~ 18652441 (-) False LOC120556268
XM_039794656.1 mRNA downstream 3732 18456550 ~ 18466081 (-) True LOC120555694
XM_039794653.1 mRNA downstream 18794 18439582 ~ 18451019 (-) True usp8
XM_039794654.1 mRNA downstream 18794 18440985 ~ 18451019 (-) False usp8
XM_039794635.1 mRNA downstream 109603 18335550 ~ 18360210 (-) False tmod2
XM_039794637.1 mRNA downstream 109616 18335550 ~ 18360197 (-) True tmod2
XM_039795684.1 mRNA upstream 264 18471714 ~ 18482023 (-) True LOC120556233
XM_039794523.1 mRNA upstream 103610 18575060 ~ 18584594 (-) True LOC120555642
XM_039795133.1 mRNA upstream 136019 18607469 ~ 18639221 (-) False homer2
XM_039795132.1 mRNA upstream 136019 18607469 ~ 18638819 (-) True homer2
XM_039795742.1 mRNA upstream 178579 18650029 ~ 18658659 (-) True LOC120556268
TU37603 other downstream 49314 18417978 ~ 18420499 (-) True G28269
TU37599 other downstream 86171 18382705 ~ 18383642 (-) True G28265
TU37410 other downstream 249263 18218122 ~ 18220550 (-) True G28121
TU37150 other downstream 956645 17508123 ~ 17513168 (-) False G27925
TU37697 other upstream 247922 18719372 ~ 18720019 (-) True G28345
TU37831 other upstream 588305 19059755 ~ 19062150 (-) False LOC120555695
TU37839 other upstream 652116 19123566 ~ 19126376 (-) True LOC120555836
TU37840 other upstream 652116 19123566 ~ 19126376 (-) False LOC120555836
TU38446 other upstream 3109592 21581042 ~ 21583498 (-) True G28933

Expression Profile