RNA id: TU37640


Basic Information

Item Value
RNA id TU37640
length 1359
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G28302
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18542458 ~ 18558219 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attgttttatttttcattgaatAGTTTCTAATTTTTTTCCCGTGCCTTCAGACCAAGATGTGAATCAGAAGGAACAAACAAATCCCCTGATTGCGTGTACAATTCTGTCataagagagaaacaaagataaCTGGGGTCAATACATCTTATTAACCATCATTTGCTTAGCTGTTATGGCATTTATATACTGTTTAACGAGGAAATATTCTTAATAAGCAACAATCTTTAACATATATTAATATCCTAATCTGAAACCAGCCTTAAACAAAAAGCTGTTCCCTGGGTCTGTGCATAAGGATGTTGGACAAGTGGCCAAAATAGAATGATGTTTGATCAAAAATCAATGCAAGCTGGCCTCTAGGAGACTGCTTAAAAACAGTGATAGACAACTCTGCGATCCACATCCTTCTTAACCATTTAGTTCTCTGTATACATGCTCTGTGTGACCTTCCAATTCACAGGTATTCAGATAGCTATAATGGTTGATCTCATTTGCTGCAAATCCAGTGTAAAATTCATTGTCTATAAAAATATTGAGATTTACTTGAACATAACCTTCTGACTATGTTATAATAAAAACTCCAGATGTCCGTTGCAGTTGCACAGTGGGATGTACTGTataaatattgtataaaataagGCAGTCTTTTCAGTAGGATAAACCAGATCCAAAAATGTCTGGGAGAAAAAAATTTCAAGTCCAAAATGTTTTCACATATTTCTGCTGTTGTTAAATGTCAAGCGGTTTACAGCATTAAACCAAGAGTAAGGGATTGTTGCATCAATGAAAACACCCACACATGtccgtgtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaagactcgGTTTCTTTCATTTAACACCTTATCATGGACTTTCATGGTGAATGGACATTCATGTAGACATGCGTGTTATCACTGTGGAATTCTGCAAACGCTCTGACGTGTGTTATCATATGGGAGTCGATTCATTTGTAGCGGAAGGAAGCTGTTTGGGTGTTTCGGACTTCTCGAAGGACCCTTGTGCTCTACAGGGCATGCTGCTTACCGTCATCAGCCCCCCCACGAGATCATTCGTATGGGGGTCTTCATCCTTGGTGCCGAACTGTGGGGAGTAGAGCTCAGTTGTCCTCAGGATCTCCAGTACCCGATCCAAGGCCTCTGCCACAGGCATAGGGCTGCTTTCCTGCGCTGCATTGATGATGTTGATTACCTTAGTGATGGGAGCTTCTATAGTCATGGAGTGGATTCGGGCCATCGAGGAGTGCCTGCGCTGTGAGCTCCCATCGCTCCCCCGAGACGTTGTGGATCTAACGTCCAGAGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37628 lncRNA downstream 44369 18497849 ~ 18498089 (-) True G28291
TU37621 lncRNA downstream 71008 18469813 ~ 18471450 (-) True G28284
TU37604 lncRNA downstream 121959 18416069 ~ 18420499 (-) False G28269
TU37601 lncRNA downstream 155850 18385531 ~ 18386608 (-) True G28267
TU37598 lncRNA downstream 160079 18381978 ~ 18382379 (-) True G28264
TU37650 lncRNA upstream 9882 18568101 ~ 18569077 (-) True G28309
TU37674 lncRNA upstream 91832 18650051 ~ 18652441 (-) False LOC120556268
TU37814 lncRNA upstream 447689 19005908 ~ 19008421 (-) True G28429
TU37827 lncRNA upstream 478629 19036848 ~ 19037059 (-) True G28437
TU37828 lncRNA upstream 495105 19053324 ~ 19053869 (-) True G28438
XM_039795684.1 mRNA downstream 60435 18471714 ~ 18482023 (-) True LOC120556233
XM_039794656.1 mRNA downstream 76377 18456550 ~ 18466081 (-) True LOC120555694
XM_039794653.1 mRNA downstream 91439 18439582 ~ 18451019 (-) True usp8
XM_039794654.1 mRNA downstream 91439 18440985 ~ 18451019 (-) False usp8
XM_039794637.1 mRNA downstream 182261 18335550 ~ 18360197 (-) True tmod2
XM_039794523.1 mRNA upstream 16841 18575060 ~ 18584594 (-) True LOC120555642
XM_039795133.1 mRNA upstream 49250 18607469 ~ 18639221 (-) False homer2
XM_039795132.1 mRNA upstream 49250 18607469 ~ 18638819 (-) True homer2
XM_039795742.1 mRNA upstream 91810 18650029 ~ 18658659 (-) True LOC120556268
XM_039795195.1 mRNA upstream 113133 18671352 ~ 18676489 (-) True ap1s2
TU37603 other downstream 121959 18417978 ~ 18420499 (-) True G28269
TU37599 other downstream 158816 18382705 ~ 18383642 (-) True G28265
TU37410 other downstream 321908 18218122 ~ 18220550 (-) True G28121
TU37147 other downstream 1029290 17509950 ~ 17513168 (-) False G27925
TU37697 other upstream 161153 18719372 ~ 18720019 (-) True G28345
TU37831 other upstream 501536 19059755 ~ 19062150 (-) False LOC120555695
TU37839 other upstream 565347 19123566 ~ 19126376 (-) True LOC120555836
TU37840 other upstream 565347 19123566 ~ 19126376 (-) False LOC120555836
TU38446 other upstream 3022823 21581042 ~ 21583498 (-) True G28933

Expression Profile