RNA id: XM_039795742.1


Basic Information

Item Value
RNA id XM_039795742.1
length 2278
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC120556268
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18650029 ~ 18658659 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGCGTGTGCGTCATTTCTGGAGAGACGCAAgctcatagacagtaaaagaaagctagCAGGTAACGTTGGCTAGCTAAACATCAAAGGATGATGGCGTCAACCGCGATGGATACCACGTAAATAACTCACGAGACGGACGGTCGGGGTATTTCCGTGGATCATTAACGGTACTTTGAAGAATTAGAATAAAACAGAGAAGCGTGTCGTTATGGCGACCGGGAGCGGCGACAGCGTCGGCTTAGCGTCAAACCATGACGGTCAGGAGGCAGCATCCAACGCGGTTCAGTCGGTTCAGTCTGGAGCCGCAGCGGTGCTCTCCAACGTGCCAGCCTCCGGCCCTGCCCGGTCCGCCTCCCCGCCTGTCCTCGGCCTTCACCGGGAACCCATGTACAACTGGCAGGCGACGAAGAGCTCCCTGAAGGAGCGCTTCGCCTTCCTCTTCAACAACGAGCTGCTCAGCGACGTCAGGTTTATAGTCGGGAAGGGCAGACAGGCCCAGAGGATACCGGCCCATAAATTTGTCCTGGCAGCTGGCAGTGCCGTTTTTGATGCCATGTTCAACGGAGGGATGGCCACAACCTCGGCTGAAATAGAGCTGCCTGATGTGGAACCGGCAGCCTTCCTCGCCCTGCTCAGGTTCTTGTATTCTGACGAGGTCCACATTGGTCCAGAGACCGTGATGACGACTCTGTATACAGCTAAGAAGTATGCAGTCCCTGCTCTGGAGAGTCACTGTGTGGAGTTCCTCACCAAGCACCTCAGAGCCGACAACGCGTTCATGCTCCTCACTCAGGCAAGGTTATTTGATGAGCCTCAACTTGCCAGTCTCTGCTTAGACACCATAGACAAAAGCACTGCGGACGCAATAAATGCAGAGGGCTTTACAGATATTGACCTCGaAACCTTATGTGCAgtgctacaaagagacacactcAGCATCAGGGAGAACCGCTTATTTGGGGCGGTGGTCCGCTGGGCAGAGGCCGAGTGTTACAGACAACAGCTCCCCCAGACCTCGGAGAACAAACAGAAGGTTCTGGGGAAAGCTCCTCCGCTTACCCTTGATATTCTTTCTTGTGCAACAGGGCCTGCCCAGTCTGGAATATTGTTCGATCGGGAGGTGGTAAATCTGTTtttacactttacagtaaaCCCCAAACCACGGGTCGACTACATCGACAGGCCCCGCTGCTGCCTCAGGGGGGAGGAGTGCAGCATTAATAGATTCCAGCAGGTTGAGAGTCGATGGGGGTACAGTGGTACCAGCGACAGAATCAGATTCAATGTTAACAGAAGAATATGCATAGTGGGTTTTGGCTTGTATGGTTCAATACATGGCCCCAATGACTATCAGGTCAACATACAGATTTTAGAGAGCGACAAACGCATTACACTGGGGCAGAACGACACAGGTTTTAACTGTGACGGCACAGCCAACACTTTCAGAGTGATGTTCAAAGAGCCTGTGGAAATCCTACCCAGTGTCAGCTACACTGCATGTGCCACTTTAAAGGGCCCAGACTCTCATTATGGCACAAAAGGGTTAAAGAAAGTGACCCAGGAATCAGCGACGGGGACCAAGAcgacctttttcttttttagctcGCCAGGAAATAATAACGGTACATCAGTGGAAGATGGGCAGATACCAGAGATCATCTACTACACCTAGACTTAACACGGTGTCATGCAGGTACACTGAGCCAGACACCACAAGACTGGACTGCTGGAGATAAACGTAGTGCCTCATGATCCCTTGGaataaagaatgtgtgtgtttgagatagtgtgtgtatgtgtgtgtgtgtttgagagagtgtgtgtatctgtctatACAATAGCGGTGTACAGACATGATCAAGAATGTGGAAACAAGCGGAGTTGTGGGAAAATCACAGCTCTTGTATGAAGAAAAGCTTTTGTGGCATAAACtgtttcatcatttgtaaatgaTCTAAATCCTGttgtcctgtctgtgtgttgttatcaggAAGCTGCCAGTGCAGGAGTTAATCCTGCACGAGGGAAACTAGAGAGACTGCTACCATTTCATTTAGTTATTTTCTCAGCTTTTGGTGATTCATTTACAGAAAGTATAacatttgcatatttttttattgtgcactGTTATCATTTATTCAGCAGGTGTCTTCAAGTACTTTGTTTTTGCATTGTATCAAGGAtccatgtgtgttgtgtaactTCGCCAGTGGTACTGTACATGTTGTAATTTATGACTACATGTTTGCATAGCacttcattaaaatgaaaagaaaa

Function

GO: NA

KEGG:

id description
K10477 BTBD1_2; BTB/POZ domain-containing protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37650 lncRNA downstream 80952 18568101 ~ 18569077 (-) True G28309
TU37640 lncRNA downstream 91810 18542458 ~ 18558219 (-) False G28302
TU37639 lncRNA downstream 91810 18555965 ~ 18558219 (-) True G28302
TU37628 lncRNA downstream 151940 18497849 ~ 18498089 (-) True G28291
TU37621 lncRNA downstream 178579 18469813 ~ 18471450 (-) True G28284
TU37814 lncRNA upstream 347249 19005908 ~ 19008421 (-) True G28429
TU37827 lncRNA upstream 378189 19036848 ~ 19037059 (-) True G28437
TU37828 lncRNA upstream 394665 19053324 ~ 19053869 (-) True G28438
TU37829 lncRNA upstream 395438 19054097 ~ 19054692 (-) False LOC120555695
TU37832 lncRNA upstream 404669 19063328 ~ 19063839 (-) True G28442
XM_039795133.1 mRNA downstream 10808 18607469 ~ 18639221 (-) False homer2
XM_039795132.1 mRNA downstream 11210 18607469 ~ 18638819 (-) True homer2
XM_039794523.1 mRNA downstream 65435 18575060 ~ 18584594 (-) True LOC120555642
XM_039795684.1 mRNA downstream 168006 18471714 ~ 18482023 (-) True LOC120556233
XM_039794656.1 mRNA downstream 183948 18456550 ~ 18466081 (-) True LOC120555694
XM_039795195.1 mRNA upstream 12693 18671352 ~ 18676489 (-) True ap1s2
XM_039795677.1 mRNA upstream 40686 18699345 ~ 18705558 (-) True LOC120556226
XM_039794056.1 mRNA upstream 47631 18706290 ~ 18718603 (-) False ppef1
XM_039794055.1 mRNA upstream 47631 18706290 ~ 18718603 (-) True ppef1
XM_039795068.1 mRNA upstream 70117 18728776 ~ 18767719 (-) False cdkl5
TU37603 other downstream 229530 18417978 ~ 18420499 (-) True G28269
TU37599 other downstream 266387 18382705 ~ 18383642 (-) True G28265
TU37410 other downstream 429479 18218122 ~ 18220550 (-) True G28121
TU37147 other downstream 1136861 17509950 ~ 17513168 (-) False G27925
TU37697 other upstream 60713 18719372 ~ 18720019 (-) True G28345
TU37831 other upstream 401096 19059755 ~ 19062150 (-) False LOC120555695
TU37839 other upstream 464907 19123566 ~ 19126376 (-) True LOC120555836
TU37840 other upstream 464907 19123566 ~ 19126376 (-) False LOC120555836
TU38446 other upstream 2922383 21581042 ~ 21583498 (-) True G28933

Expression Profile