RNA id: TU37767


Basic Information

Item Value
RNA id TU37767
length 3969
lncRNA type inter_gene
GC content 0.44
exon number 7
gene id LOC120555698
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19087195 ~ 19091823 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTTTAATGGAGCTTCCCAGTAAAGGTATTTCACTGGTTAGCTTTTTAGtatattgttttgattttacattttgcagtCAGATGTTCTCATCAACTTGCTGAGGGGCAGACAAGCTGTGAtaagtctcacattgccagacagatctccacagcactgcggagaaAGGAAGCTGTGATAAACCCACAAACAAAATTCTTGGCCCTGTTAAagggcattctctatgggcccctcccagCATCCACAGCCATTCATTTTATCATCTTGTTGGGCCTtatgggtactcagtcccctttgccccccagtccgacgcccctgccCACAAATAGCAAACAGTAATCAAGTGACGGTTGACAGCTGCACCAATGCTGGACTTCTATTCATCCGGTGGCTGGAAACACACTGTTGCTCCAATGTTTGTTGAATAGGTAGATCATTGTTTGCATCATGAGGGCATTTTATGTCAGCTAATTTGATGTGTTTCTGCCACCTAGTGGAAGGTTTTCAGAACAACAAATACATTGCATTTCTCTgacttcagaatcagaataaggATGTGTAGACATAAAAGGATTTTGATTTGGTTTTAGATTGATCTCAATGTAGCTACTTGCACACaacatttccaacattttacaGGAAGatagaaaaagctaaaaacaagGTCAATaagctaaaaaacaaaaatatacaactATTTCATACAAGTGCATGAAAAAAGGTgtatacacactaaaaactcctgggttattttgtcaacccagtttctgggttatttgtgttgggttaaaattatgggttattttttcagagagtaactcattttctgggttatagggctAATATTTGACCCATTGCCTGGGTTGTTTGGgtttctgggttatttttcaaagagtaGCTAACCCATGTTCTGGGTTATAGGCttggctttctctctctcgcgcgctctctctctctacaatgTATTTTTCGGTTAGTTGTCTTGACATCGGACCAGCTTATTTTCTCCTCTAAACGACACTTTGGTTCCTGGGGCAGGGAGGCGAGGTAAGCATTTTCATCTTACTGGTAGTTTGTTGCAGAAAATGTGCTTGTTTAAACCGTGCTTCTAAAATAAACTATCTTACGTTCCATTAGCTaacttaactagctagctacctagcttGCTTGTGAAGAGTAACTGACATTTACGTTTTTTCAAAGGAGTTGTTAATGGAGACATGTCAATGCTGTATCGttgttatctatctatctagcgcTATGTCTGTTTGCACATTAAAATAAACGTTATCTAAGTAGCTAGCTAAGTAAGTTAtcggttttcttttttattaagatGTATCTGAGTCACTGTATGCTAAAttggctggctagctagctagctagccagccaaTGTAGCCAGGTTAATGATACCACAAATGTTAGCACGCTAAAACGTAGATAACATTGATTTAGCTCGGTTTAAGAAGATGTTTATGAATAAAACGTTACTAACGATAGCTAATCCACCGACCGTTAGAAATGTAcggacattattattattggataTTTTCTTGCTGAAAAGTGAACAGAAAAAGGAGGGAAATTTGTATTCAGCTATGACGTAGCCTATTTTGAATGCTCACGTTTCCACGTTGgatgtatttttaattgtttgttaaCGTTACTAAAAGTTATGTATTAAGTACTTTATGTAgttccttttaaataaaaaatgcaaaaatgtaatGCTGACAAATCGCCGGTTCCCGCCCGGGGCTGTGGTGTACCTCAGATTTATACACAACTCCCTGGAAGTTATctctgtacatttatttttaaggatGAATATACAGAAAAAATGTGTAGAGTAGATTACACTCGTTTTTAAAGGAGGGAAATTTGGGAgggaaaatctattttttttttttttaggtataaCCTTTTACATAAATCAGGCTTTGAATTATATATGAATTAATCCCTAATGTAAAAACCTTAACAATATAGAGAGGAAGGAAACAAATAGACAGggtaaaataaacatgtaattgtgtatctgttttttgtaatagtctgaaagaagaaaaatagccctcagcctcagcagcatcagcctcctcctcaacacacacaggagcagctAGACCCTGTTGGGGAGCAGCCTCCGTTCATGCTGCTGGACCAGAGTCAGGAACAAACCTGAAAAACCTCTTCCGGGGCAGTGGACGTAGCCCTGGAATAAGGAACCTGAAATTCCCTCCTTCAATTGAAGACCTCCAGGACTACCAGCGGTACCATGAGGGCAGCTGCCCCCCTTCCaagcagctggaaaatgcacagTCCAAAGTGTCGAGGGTCAGGTCTTTTATATTTTACCTGGCAAAGGGACAGACTGAATTGTTCAGTTTGCTATTTTAAGGAACATTGATGGCATCCAAAAatacacagcccacctccagtcCCCAGGCAAGACCATCACAACGGCACATTTCTACCTGAGAACCATACAGCAGTTCCTCAAATACTTTCGGGAAACCCTGCCTGCCCAGTCTCACCTGACTGCGATGGATGTGGTGAGCGTGCTGCGCCCCGTCACAAAGTGCATCACAGACACAACCAGGAACGTTGTCCTGCACCTGCTGGCAGTGAAAAGCCACAAGAAGGCCAGGATAATATCCTGCGAGGACCTGAAGCGGTGTCAGGAGGGGGCCACACTGAGGATCCCAGAGCTGCTGGACGCCCTGGAGGAGAACCACACACCGTCGCCGCGGTACCGTTTTTACAGCTACTTTGCGGCTTTCACAGCCTCCATTACGGTCATTGCCCAGGGGGATTGGTAACCTCCGGGTTTGCGAGGTCAAAGAGGCCGCAGAGGCGCACAGGCCTGGCGATGATGGTTTTGTGATCTCTATCAGGGAACACAAGACTAACAAGTCCTTTGGGGTGGCCCAAATGTTCTTAGAGACTGACGAGTTTCGATGGCTGGTTCGGTGGCTGCAGCTACGGGTGGCCAGCAAGCCACCGAACCAGCTGGTTTTCTTCACGGCTGGGAAGGGCCCATGCTAAAACTTCTTGCACCACCTGCAGGTAGCGTGGGCGGAGATCTGCCTTAAAGGGTCCCCCAACTTCACTGACCTGAGGACCGCTGTGTCTGCTCATGTCAAGAACAACCTTCTGTCGGGCAGCAGAAGATGGTGGCCACCTTTATGTGCCACAACATGGCCACCGCTGACTGCTTCTACGCCCTCAGCCTGAACGTGGCCCAGTCTAAGAGGATGAGGGAGCATTTCCGCTAAGCCCTGACCCACACCGCGCCATCACCGGAGCAACCAGAagcctccccctcctcccccaccaGGAAGAGTTACCGCAAGCCTGAGTCCTCCTCCAGTTCCAAGACAAAACCCCTGCCCCCTACCAGGAGTCAGGGACCTCGGGactggagaaggagagggagtttATGGCGAGGCTGCAAAATACACCAGAGAAGGCCCGAGAAGTCTCGTGAACACGCCAGTGTGCTTCAACCTAACTTGTGTGGTGGGAAATGTCTTCAGCCACACcggaaaataagttttgtttttaatactttgcTTTTGTATGAGCTGGATTATACAGTACACCAAACGTAttatgaataaaacaacatggatATTCCATTACTATGGGTTCTTACTGACATTTCAGGACCATTTATGACgggtcgggatattgccatccTTGTGTAACCCAGACTAAAAGGTACACAGGCATAGATTCACAAGGGAGTGGAGGGGggcattttatagcattttgatAAGATGCATAGTGATATTAATCAAATACAGTAATGCACACAAAAGAAATCTATGGTTtctatgggagaaaaacaaacattatgtacATTAGCCATGCCCTACAGGAATTGGGATTTTGTACgttgatacattttgaaaccaCTACATGATGTATGTTCTAATGTCTAAGTTttacataaattaaataatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37770 lncRNA upstream 232 19083207 ~ 19087001 (+) True LOC120555697
TU37777 lncRNA upstream 15197 19071820 ~ 19072036 (+) True G28396
TU37775 lncRNA upstream 29380 19057546 ~ 19057853 (+) True G28394
TU37774 lncRNA upstream 32229 19054124 ~ 19055004 (+) True G28393
XR_005638784.1 lncRNA upstream 239827 18846269 ~ 18847406 (+) True LOC120556026
TU37779 lncRNA downstream 2872 19094685 ~ 19094900 (+) True G28398
TU37786 lncRNA downstream 8606 19100419 ~ 19100639 (+) True G28405
TU37787 lncRNA downstream 9240 19101053 ~ 19101789 (+) True G28406
TU37788 lncRNA downstream 10904 19102717 ~ 19103075 (+) True G28407
TU37789 lncRNA downstream 11547 19103360 ~ 19103656 (+) True G28408
XM_039794662.1 mRNA upstream 169 19074308 ~ 19087064 (+) False LOC120555697
XM_039794663.1 mRNA upstream 169 19074310 ~ 19087064 (+) False LOC120555697
XM_039794664.1 mRNA upstream 829 19074310 ~ 19086404 (+) False LOC120555697
XM_039794665.1 mRNA upstream 903 19074310 ~ 19086330 (+) False LOC120555697
XM_039795102.1 mRNA upstream 63261 19010477 ~ 19023972 (+) True tmem39a
XM_039794661.1 mRNA downstream 12453 19104266 ~ 19109063 (+) True LOC120555696
XM_039794964.1 mRNA downstream 22153 19113966 ~ 19123540 (+) True LOC120555834
XM_039794966.1 mRNA downstream 22153 19113966 ~ 19123540 (+) False LOC120555834
XM_039794965.1 mRNA downstream 22153 19113966 ~ 19123540 (+) False LOC120555834
XM_039794967.1 mRNA downstream 22601 19114414 ~ 19123540 (+) False LOC120555834
TU37478 other upstream 518753 18561895 ~ 18568480 (+) False LOC120556478
XR_005638756.1 other upstream 1344499 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 3600812 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 3640841 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 5849414 13235235 ~ 13237819 (+) True LOC120556202
TU38013 other downstream 395433 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 405925 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 406280 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 420543 19512356 ~ 19520218 (+) False ercc3
TU38234 other downstream 1619291 20711104 ~ 20761147 (+) True G28770

Expression Profile