RNA id: XM_039794665.1


Basic Information

Item Value
RNA id XM_039794665.1
length 1772
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC120555697
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19074308 ~ 19087064 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCGTGGCATCTCAACCTACCACCTTAAATGCCACTGCTAACAGAGGCAGATGCCGTGGCATCTCAACCTGCCACCGGAAATGCCACTGCGAGCTGCCGATGCCACTATTTGAGCTAGCCCCTGTTGActgtatccattttccgctagaaattcaattgttataaactttagagacaaaactttcctaatacgccagtttctgcggtcatggaagatgaacgtctgtgatttcggtgcacgcgaacaacgtgtttttgttgttatgtcacagggtgtgaatagctcagctgtgtggccgaggctattctaCCGGGGGTGGAGACACTCCGAAATAGATATGAGGTAGATGAGAAGAGCAGTGTTGATTGACTTTGTTATGTAATATAGCTCCTCCTTTTACTTTCAGTTCTCATGTAATTCCACTGAACGGGACCAAGGAGTTTATAGAATACCCTGGACTCTCTGGAACCTGATGTGCTTTGTTCTCATCatgactgtgaaaatacttcCGATTCTCCTGACGTTATGGACAGgtgtgtgtccccAGAGACCCAGAGAGATATATGTCAAGGAAGGTGAGATGGTCGCGCTGTACTGCCCCCGTCCCAGAGGGTATGATCATGGTGATGCCAAACTGATCTGGACCAGTTACACCACCCAGGACATGGATCTGACCAACAACGTGTCATCAGCTGAGCAGAGGCAGATGGGCATACTGGTTCATGGGAGGAGCCTTGTGATTCTTAATGCCTCTGTAAACTATCGGGGGAATTACTCATGCACTCAGGGGAATGCCAGCACCTGGTTCAGGCTGACAGTTCTCACACCACAGTCCAGAGAGTATGAAAAGATGACCCAGTACCCTATAACATGTTACACACAAGAGACCTGCACATTGCATTGCCCTGATGTAAACAGACCTGCTCCAAACATCCCGAATATAACCAGCAACGGCATTATATGGCACAAGGAGGGCGAGTCATTGCCAAAAAACAGTTACTTCTCAAGTGTGGAAGAGAGTGATCATGGGGTCTACACCTGTACCAGATCTTACCTGTGTTATGGTCAAATATATAACATGACCTTTACAATGGTGCTTGATGTCCAACCAAAGGAAAAACCTGGGAAAGATGCTGCAATCACAGAACCACAGAATAATCATGTATTTCATGTAGATTTGGGCTCACCAAAGGTGATTGATTGTAAAGCTGTTATGTATTCAGACTTTGATGAGGTATTCTGGTTAAGTGGGAAATCATTGGTGGAAACGGACATCAGCTTACCAGTTTTCTACAATTTCACAAGgGAAAATAATGACGGAGAATTAAAGATGACAGCATCTCTCGTCTTTAAAAAAGTGTCAGAGGAGGATCTATCAAAAAATTACACCTGTAAACTGCAATCTGTATCCGAACACTCAAGCTTTGTCACAATCAACTTGGCCCAAAAATCATCATTTTCGTCACTCTCCCTCGCTCTTGGCATTGTGTTGGTCGTGGTGGTGATTGTTGTAGCAGTTGTTCTGTATATGAAGCTGAAAATGGACATTGCTGTTTTTCTACGACGCACTCTTTGTTGCTATCCCAGCACCTCAGATGGAAAGAGCTATGATGCCTTTTTGGTCTGTTACAAGAGCAACACAGACGTAGGACTACATGAAGATgacagaaaagagaagagagaatgtTTTGGAAGAGAGGTTTGGTTATAGTCTCTGTCTTGATCGTGACGTCTTACCGGGGAAAGCTCCTTCTTCTCCGTCTAGGATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37777 lncRNA upstream 2274 19071820 ~ 19072036 (+) True G28396
TU37775 lncRNA upstream 16457 19057546 ~ 19057853 (+) True G28394
TU37774 lncRNA upstream 19306 19054124 ~ 19055004 (+) True G28393
XR_005638784.1 lncRNA upstream 226904 18846269 ~ 18847406 (+) True LOC120556026
TU37505 lncRNA upstream 458501 18607305 ~ 18615809 (+) True G28195
XR_005638744.1 lncRNA downstream 865 19087195 ~ 19091823 (+) False LOC120555698
XR_005638745.1 lncRNA downstream 866 19087196 ~ 19091823 (+) False LOC120555698
XR_005638743.1 lncRNA downstream 867 19087197 ~ 19091823 (+) True LOC120555698
TU37767 lncRNA downstream 903 19087233 ~ 19091813 (+) False LOC120555698
TU37779 lncRNA downstream 8355 19094685 ~ 19094900 (+) True G28398
XM_039795102.1 mRNA upstream 50338 19010477 ~ 19023972 (+) True tmem39a
XM_039796005.1 mRNA upstream 65924 18999528 ~ 19008386 (+) False LOC120556409
XM_039794661.1 mRNA downstream 17936 19104266 ~ 19109063 (+) True LOC120555696
XM_039794964.1 mRNA downstream 27636 19113966 ~ 19123540 (+) True LOC120555834
XM_039794966.1 mRNA downstream 27636 19113966 ~ 19123540 (+) False LOC120555834
XM_039794965.1 mRNA downstream 27636 19113966 ~ 19123540 (+) False LOC120555834
XM_039794967.1 mRNA downstream 28084 19114414 ~ 19123540 (+) False LOC120555834
TU37478 other upstream 505830 18561895 ~ 18568480 (+) False LOC120556478
XR_005638756.1 other upstream 1331576 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 3587889 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 3627918 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 5836491 13235235 ~ 13237819 (+) True LOC120556202
TU38013 other downstream 400916 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 411408 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 411763 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 426026 19512356 ~ 19520218 (+) False ercc3
TU38234 other downstream 1624774 20711104 ~ 20761147 (+) True G28770

Expression Profile