RNA id: TU37775


Basic Information

Item Value
RNA id TU37775
length 308
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G28394
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19057546 ~ 19057853 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCAGGAAGTGCCTCTCCTCGTCCTCTCGCTGGTGTTTGAGCTTCACACTACGACTCCACTCGTCCTCCAGTGACTTACTGATGTCCTGCTTCTTCTCAAAGCGACTAATGCGGTCCAATATTAACCTGGACAGAAAACATACCACAGAAAGTTtccacaaaaagaaaacatttttggaCTAAGGTTTTCCTTTACTCACtccattttgttgtgtttgagaacttctctctctttctccagctGTTCTCGGCGGTTGTGCAgttcttctttcttcctctgaGTGGCAGCGTTGCAATTTACCTGGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37774 lncRNA upstream 2542 19054124 ~ 19055004 (+) True G28393
XR_005638784.1 lncRNA upstream 210140 18846269 ~ 18847406 (+) True LOC120556026
TU37505 lncRNA upstream 441737 18607305 ~ 18615809 (+) True G28195
TU37504 lncRNA upstream 447668 18607305 ~ 18609878 (+) False G28195
TU37466 lncRNA upstream 612250 18444816 ~ 18445296 (+) True G28163
TU37777 lncRNA downstream 13967 19071820 ~ 19072036 (+) True G28396
TU37770 lncRNA downstream 25354 19083207 ~ 19087001 (+) True LOC120555697
XR_005638744.1 lncRNA downstream 29342 19087195 ~ 19091823 (+) False LOC120555698
XR_005638745.1 lncRNA downstream 29343 19087196 ~ 19091823 (+) False LOC120555698
XR_005638743.1 lncRNA downstream 29344 19087197 ~ 19091823 (+) True LOC120555698
XM_039795102.1 mRNA upstream 33574 19010477 ~ 19023972 (+) True tmem39a
XM_039796005.1 mRNA upstream 49160 18999528 ~ 19008386 (+) False LOC120556409
XM_039794662.1 mRNA downstream 16455 19074308 ~ 19087064 (+) False LOC120555697
XM_039794663.1 mRNA downstream 16457 19074310 ~ 19087064 (+) False LOC120555697
XM_039794664.1 mRNA downstream 16457 19074310 ~ 19086404 (+) False LOC120555697
XM_039794665.1 mRNA downstream 16457 19074310 ~ 19086330 (+) False LOC120555697
XM_039794661.1 mRNA downstream 46413 19104266 ~ 19109063 (+) True LOC120555696
TU37478 other upstream 489066 18561895 ~ 18568480 (+) False LOC120556478
XR_005638756.1 other upstream 1314812 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 3571125 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 3611154 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 5819727 13235235 ~ 13237819 (+) True LOC120556202
TU38013 other downstream 429393 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 439885 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 440240 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 454503 19512356 ~ 19520218 (+) False ercc3
TU38234 other downstream 1653251 20711104 ~ 20761147 (+) True G28770

Expression Profile