RNA id: TU37779


Basic Information

Item Value
RNA id TU37779
length 216
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G28398
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19094685 ~ 19094900 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATACGGGTCTACTAGCCTATGCAGGATACCTTTTCATTCAATAATCGTTCAGTTGTGGATTTATCATTCAGGACTTATTGTGCACAGTCTAGAAAAGACAAAACACTGCCGTTCCAGGCTGGATTAAAAAGCTCATTGAAGGCCTACGATTGCGTGTAAGACCTCGTTTTAACAGAAAATTACTCAGCgtctaaacaaacaaaaaaagtctcTATC

Function

GO:

id name namespace
GO:0008201 heparin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638744.1 lncRNA upstream 2862 19087195 ~ 19091823 (+) False LOC120555698
XR_005638745.1 lncRNA upstream 2862 19087196 ~ 19091823 (+) False LOC120555698
XR_005638743.1 lncRNA upstream 2862 19087197 ~ 19091823 (+) True LOC120555698
TU37767 lncRNA upstream 2872 19087233 ~ 19091813 (+) False LOC120555698
TU37770 lncRNA upstream 7684 19083207 ~ 19087001 (+) True LOC120555697
TU37786 lncRNA downstream 5519 19100419 ~ 19100639 (+) True G28405
TU37787 lncRNA downstream 6153 19101053 ~ 19101789 (+) True G28406
TU37788 lncRNA downstream 7817 19102717 ~ 19103075 (+) True G28407
TU37789 lncRNA downstream 8460 19103360 ~ 19103656 (+) True G28408
TU37790 lncRNA downstream 15018 19109918 ~ 19111687 (+) True G28409
XM_039794662.1 mRNA upstream 7621 19074308 ~ 19087064 (+) False LOC120555697
XM_039794663.1 mRNA upstream 7621 19074310 ~ 19087064 (+) False LOC120555697
XM_039794664.1 mRNA upstream 8281 19074310 ~ 19086404 (+) False LOC120555697
XM_039794665.1 mRNA upstream 8355 19074310 ~ 19086330 (+) False LOC120555697
XM_039795102.1 mRNA upstream 70713 19010477 ~ 19023972 (+) True tmem39a
XM_039794661.1 mRNA downstream 9366 19104266 ~ 19109063 (+) True LOC120555696
XM_039794964.1 mRNA downstream 19066 19113966 ~ 19123540 (+) True LOC120555834
XM_039794966.1 mRNA downstream 19066 19113966 ~ 19123540 (+) False LOC120555834
XM_039794965.1 mRNA downstream 19066 19113966 ~ 19123540 (+) False LOC120555834
XM_039794967.1 mRNA downstream 19514 19114414 ~ 19123540 (+) False LOC120555834
TU37478 other upstream 526205 18561895 ~ 18568480 (+) False LOC120556478
XR_005638756.1 other upstream 1351951 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 3608264 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 3648293 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 5856866 13235235 ~ 13237819 (+) True LOC120556202
TU38013 other downstream 392346 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 402838 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 403193 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 417456 19512356 ~ 19520218 (+) False ercc3
TU38234 other downstream 1616204 20711104 ~ 20761147 (+) True G28770

Expression Profile