RNA id: TU37828



Basic Information


Item Value
RNA id TU37828
length 546
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G28438
representative True

Chromosome Information


Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19053324 ~ 19053869 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


tgcttgaCTCGGCTCGACTTGGCTCGACCGCGGTGCCCCgccctccattttccattgcagatttagtacacCTTATGCCTGAGGCAAGCGTGACTGGTCGTCATAGTggcgccgcaggaaactgccgtgacctaacacGGCAcgcacacagaacgtcgaaggtgtgttgtttttgactctcagcatgtggctgttgccagAAGACAacttttgtttcaaaagaagctggaggcagcaaaaaaaacacagctggctaaactatttaaaaatggcgggtttgttcaggacacccccgtctgtcgctagcaatgatgacgcagtgattagtgacgattctctctggccaatcagtagtctgcaggttttcacgtcaccttttggtatcggctcagctcgcttggaacctggacggaggtggtactaaaaaaaagtaactGTTAGCAGGTACaagggactttttttcgtaatggtaaaccaaaaaaggcgagtagagtcgaggcgagtcgagcaggtaccgcgtgatggaaaaacgccataatgCAGGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU37827 lncRNA downstream 16265 19036848 ~ 19037059 (-) True G28437
TU37814 lncRNA downstream 44903 19005908 ~ 19008421 (-) True G28429
TU37674 lncRNA downstream 400883 18650051 ~ 18652441 (-) False LOC120556268
TU37650 lncRNA downstream 484247 18568101 ~ 18569077 (-) True G28309
TU37640 lncRNA downstream 495105 18542458 ~ 18558219 (-) False G28302
TU37829 lncRNA upstream 228 19054097 ~ 19054692 (-) False LOC120555695
TU37832 lncRNA upstream 9459 19063328 ~ 19063839 (-) True G28442
TU37837 lncRNA upstream 30433 19084302 ~ 19087065 (-) True G28447
TU37848 lncRNA upstream 56518 19110387 ~ 19111769 (-) True G28456
TU37849 lncRNA upstream 62118 19115987 ~ 19116404 (-) True G28457
XM_039795104.1 mRNA downstream 24087 19025898 ~ 19029237 (-) True LOC120555913
XM_039795658.1 mRNA downstream 103054 18942607 ~ 18950270 (-) True grpr
XM_039796078.1 mRNA downstream 155627 18890562 ~ 18897697 (-) True LOC120556456
XM_039795335.1 mRNA downstream 184640 18800847 ~ 18868684 (-) False nhsb
XM_039794660.1 mRNA upstream 222 19054091 ~ 19069996 (-) True LOC120555695
XM_039794658.1 mRNA upstream 222 19054091 ~ 19067696 (-) False LOC120555695
XM_039794657.1 mRNA upstream 222 19054091 ~ 19067694 (-) False LOC120555695
XM_039794971.1 mRNA upstream 69672 19123541 ~ 19126411 (-) False LOC120555836
XM_039794306.1 mRNA upstream 128659 19182528 ~ 19207643 (-) False fn1b
TU37697 other downstream 333305 18719372 ~ 18720019 (-) True G28345
TU37603 other downstream 632825 18417978 ~ 18420499 (-) True G28269
TU37599 other downstream 669682 18382705 ~ 18383642 (-) True G28265
TU37410 other downstream 832774 18218122 ~ 18220550 (-) True G28121
TU37149 other downstream 1540156 17510128 ~ 17513168 (-) True G27925
TU37831 other upstream 5886 19059755 ~ 19062150 (-) False LOC120555695
TU37839 other upstream 69697 19123566 ~ 19126376 (-) True LOC120555836
TU37840 other upstream 69697 19123566 ~ 19126376 (-) False LOC120555836
TU38446 other upstream 2527173 21581042 ~ 21583498 (-) True G28933
TU38813 other upstream 3823762 22877631 ~ 22889042 (-) True G29209

Expression Profile