RNA id: TU37839


Basic Information

Item Value
RNA id TU37839
length 2331
RNA type TUCP
GC content 0.42
exon number 4
gene id LOC120555836
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19123541 ~ 19126411 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGAAGAAGACTAGCGGCTTGACTTGTCTGGTTCCACAGGAAACGTTATGGCGGATTACGAGAATAACAGAAGGGGTGGCAACGACGACGGAGGTGATATTTGTGCTGTTTTAACGTCTAAAATGTGGCCGACAAAATAAGCAGTATTTAGCGTTAGCTCGATTGTTCAACCTATCCATGAAAACTACGCCCAGCTAATGTTAGACTGAGGAAACTTCACAAACGTTAAGCTAACTTAATGTTAGCTGCGTATcactggctaacgttagctagtgcGAAGTAACGTAAATAGTTTGCGTTGTATTAACGTAAACTATTTAGCTATGGGAATTGGGATGGCTGTAACTTCACGGCTAAAGTAACCGCTAGCTACGTTAGTCAGAGAATATGTTGAATATTTGCCTTCAGCCAGTCTCTTCGTTATCTTGCTAACCTGGCGTTAGCCTAGCTAGCGTGCAAGTATAGACGCAGGTTAACAACGTTATTATTATTTGCCCTCAGACCCTGTACAGCACTCTGTGTACCTTAACCCTGATATTGTAGGTAGTTTCTGCATACACAGTTCCAATGTGGACTATTAAGACCGTAAGTTAAATGGCAAGAACCTaagttaggctaacgttacattttgCTAGTTAATGGCTTGAAACCTTAGCCACACAGGTAAAGGTGATAGCTTATTATTCTCCAGTTCCCAGGAAACAGTTGTTCACCTTGGTGAGTTGTCTTGCCTCAAGCAGGGCCGcaggaggagggagacagagtgaaAACTAAGCCTGTCTCTTGTAGCACTGTGGGCGAAGGGACCGCAGTCAAACGCAAATCCCAGCATCTCACACCTGAAGATGAGGATGAGTCCTCCGCAGACCCACCAGCACCCCGCAAAATCTCCAAGATTGGCTTTAGCATGAGCAGTCCGATGGGGAAGAAGTCGAACCCCATTTctatcaaacttggagcatcAAAACCCAAAGAGCCAGTACCATCAGCTCCTCCAAAAAAGTCAGGGATGGCGTCTGTTTTTGACGAAGATGATAGTGAACCTGAGGAGATGCCCCCAGAAGCAAAGATGAGGATGAAGAATATTGGCAGAGAGACACCGACATCTGCAGGACCCAATTCCTTCAACAAGGGCAAGCAGGGTTTCTCTGATCATCAAAAACTTTGGGAGAGGAAGATGAAGGCCCAAGCAGACAAATTGTAAATGACTACTGTGAAGTTGCCACTACAACTACCACAGTTTGTGTCACTAAAAGAGGAGCGTGTGTGTATAGTTTAAACCATGTCAGAGATATCTATAAAGGCTCAAATGATTCCTTACTGTAGCCTCGGTTTTGACAACTTCTCAGCTTTGTGGACATACGGTAAAGAATACTTTAAGCCCTCTATGATATTATGTGACTGAGCTCACGTTTACGTTTCTAACCACTACTGGCTGATGCTAACTAAGAAAAGAGGTACCAGTGTCAACCCTTTTGTGATGAGAGGTGGGGTGATAGAGATAtgggacaaaaaaataattagccAGAATATTGTTTATACTAAAATTTGCTACAGTTGCTTTCTGCTGGTTAATTAGAAAATCTAGCATCTTAGAGCCCCCATGCCCCTTTTGTGACATGCTTGTTCCCAACTGAAGCTGGTTGGTTGTGGTGCTGAGCAAGCTCTCAGTGTTTGCTTGTCAAATATTTGTGTAAAAATGTACATAGAAGTGtgataatgttttatttttaaatccacaaatgggagtgtgtgtttgagtgttaaCGTAATCTTGCATGTGTGGCATAAACCAGACCTACAGATGGattgtttcatttcatttagtTTCGCAACATTAATGTACAACCCTTTGTTTTCACCAGCTATGCCACCTTATAGGCagtcttttgttttgttagttTAAGCTTTGTGTCAGTATTTCTGGTTTTGTTTACTTACTGGTTTTGTATTGAATCTGGCAATTTAAAAACCCTACAAAAATGATGTTCTGATGGAAGGACTGCTAATGTGTTTTTAGTTGACAACTGTGTGAAGACAGCTGTCACATGAACACCGGGGTGCTGGTAACACTTATTTTGAATGATTTCCAGGGGGTTAAAATGCTGGTCAGCAATGATTAGACACTTTTACAAACTCTTTTCATCGCCACTTTCACATCAGAAATAATGTGGAACCTCAGTGACTTATTCTGTGCCTGACACTTTCTTGGAAAACTCCCTTCATCAAAAATATGAACCCTGAATTCCTCTGTAGGTTACCTGACTGTTGTGCTTCCCCAAATGAATAACATAAACATCCACTGCTGCGACCTGTTTTATCTAACAACtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37852 lncRNA downstream 804 19120951 ~ 19122762 (-) True G28460
TU37849 lncRNA downstream 7162 19115987 ~ 19116404 (-) True G28457
TU37848 lncRNA downstream 11797 19110387 ~ 19111769 (-) True G28456
TU37837 lncRNA downstream 36501 19084302 ~ 19087065 (-) True G28447
TU37832 lncRNA downstream 59727 19063328 ~ 19063839 (-) True G28442
TU37856 lncRNA upstream 9362 19135738 ~ 19136610 (-) True G28464
TU37893 lncRNA upstream 99756 19226132 ~ 19227494 (-) True G28495
TU37917 lncRNA upstream 166598 19292974 ~ 19294310 (-) True G28516
TU37963 lncRNA upstream 204114 19330490 ~ 19331515 (-) True G28545
TU37975 lncRNA upstream 225621 19351997 ~ 19409502 (-) True G28552
XM_039794660.1 mRNA downstream 53570 19054091 ~ 19069996 (-) True LOC120555695
XM_039794658.1 mRNA downstream 55870 19054091 ~ 19067696 (-) False LOC120555695
XM_039794657.1 mRNA downstream 55872 19054091 ~ 19067694 (-) False LOC120555695
XM_039795104.1 mRNA downstream 94329 19025898 ~ 19029237 (-) True LOC120555913
XM_039795658.1 mRNA downstream 173296 18942607 ~ 18950270 (-) True grpr
XM_039794306.1 mRNA upstream 56152 19182528 ~ 19207643 (-) False fn1b
XM_039794305.1 mRNA upstream 56152 19182528 ~ 19207643 (-) True fn1b
XM_039796053.1 mRNA upstream 101263 19227639 ~ 19232840 (-) True psmd14
XM_039794294.1 mRNA upstream 217048 19343424 ~ 19358367 (-) False marchf7
XM_039794290.1 mRNA upstream 217048 19343424 ~ 19358367 (-) False marchf7
TU37831 other downstream 61416 19059755 ~ 19062150 (-) False LOC120555695
TU37697 other downstream 403547 18719372 ~ 18720019 (-) True G28345
TU37603 other downstream 703067 18417978 ~ 18420499 (-) True G28269
TU37599 other downstream 739924 18382705 ~ 18383642 (-) True G28265
TU37410 other downstream 903016 18218122 ~ 18220550 (-) True G28121
TU38446 other upstream 2454666 21581042 ~ 21583498 (-) True G28933
TU38813 other upstream 3751255 22877631 ~ 22889042 (-) True G29209
TU38861 other upstream 3789478 22915854 ~ 22919554 (-) False dpep1
TU38988 other upstream 4173166 23299542 ~ 23310746 (-) False spi1b
TU39182 other upstream 4786979 23913355 ~ 23958933 (-) False apba2b

Expression Profile