RNA id: TU37867


Basic Information

Item Value
RNA id TU37867
length 1285
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G28474
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19191772 ~ 19193265 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttaaacagacacaaaatttATGTCGTCTTACTCTCCAGCACGAAGGTATTGGTGGCTCCGCCAACATTAACCTCCTTGATGTCGTCGTCTGTGGCTACAGGGTGGTAACGGATGATAAACCGAGAGATGTCGCTTGGTGTGGCAACATTCGGGACTGTCCATGTCACCCTTATGTGGTCAGGACCCACCCCTTTAAACTGCAGGTTGGTGGGAGCTGGAATGGCAGCTTGTGTTTGCTTTATGTGTGTGGTCGGCTCGCTTTCCCCATCCTCTGTAACAGTGAAGATACTGATGTCATAGTCCACGCCCGGCTCCAGACCACGAATCGTGTAATAACCAGCAGATGCCTCCACCATATCTTGAAAAATTGGCAAGTTCTCGCCTGATGTTACTACCATTATCCGGTAACCAGTAATGGTTAAATAGTTCAGAGGGATCCAGCGCAGGCCGATGGTGGTGTCAGTAATGTCGACAAAGTCAATGTGACTTGGTGTGGGGATTTCTGAAAGGGTTAGGCCAGGTGCAAAGCGCAAGTAAAattagagagacagaaagacccAATAGCCATAATAATTACATTAGTTATACCAAAAACATTCATTTCATTCCCAATAAAGCAGTCAGAGATCTGAAGTGTAACAGTAGCCATGCTAGATAGAAATCATTACAAATTACTGAATTCACAATGTACTTTATAATTAAAGCAGTGATTTACAGTACTATTCTAGGCATgctcaaaaaaaattaattcaccatcccaattaaaaaaaaaacatgaccgcCATGCATGGTACGCCAGCCATTGATCATGTTAGTAGTAAGTTAtgataattaaagctgcattaaacAGGGACTGGCCAttgagttggtggagaccaaaacagagctcaaAGAACCATAAGTATTACATTTCATTCTTAAATCTTCAAGTAGCAAATCAAAGAGATGAGAAAATGTCTCCTGAATGTGCAAGTAGGATTTTTTCTGCTAACCCATTAGCCACAAGAGCTTTAAAATGTGATCATGTCAGAGCTGTATGTCTGTCAAGTCGTTTTGAAGTCATTctgcgccccctagtggccaaaaATCCATTAATGCAGCTTCATGAAGGCCTtaaagcttcttcttttttattattttttgggcacttttaggcctttatttgacaggacagctgaagacatgcaGGGGAAGAgaaggggggaatgacatgcagcaaagggccgcaggtcagagtcgaacctgggCCAGCTGCGTCGAAGATTAAACCTCTATATAaaggcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37865 lncRNA upstream 610 19190118 ~ 19191162 (+) True G28473
TU37857 lncRNA upstream 34959 19156597 ~ 19156813 (+) True G28465
TU37790 lncRNA upstream 80085 19109918 ~ 19111687 (+) True G28409
TU37789 lncRNA upstream 88116 19103360 ~ 19103656 (+) True G28408
TU37788 lncRNA upstream 88697 19102717 ~ 19103075 (+) True G28407
TU37873 lncRNA downstream 3481 19196746 ~ 19198227 (+) True G28479
TU37890 lncRNA downstream 36690 19229955 ~ 19230628 (+) True G28492
TU37927 lncRNA downstream 129767 19323032 ~ 19344125 (+) True G28526
TU38003 lncRNA downstream 270945 19464210 ~ 19464532 (+) True G28571
TU38004 lncRNA downstream 271785 19465050 ~ 19465340 (+) True G28572
XM_039794307.1 mRNA upstream 9864 19174192 ~ 19181908 (+) True atic
XM_039794262.1 mRNA upstream 22959 19164594 ~ 19168813 (+) True mnx2b
XM_039794968.1 mRNA upstream 58960 19126889 ~ 19132812 (+) True stk16
XM_039794969.1 mRNA upstream 60429 19126880 ~ 19131343 (+) False stk16
XM_039794967.1 mRNA upstream 68232 19114414 ~ 19123540 (+) False LOC120555834
XM_039795468.1 mRNA downstream 43980 19237245 ~ 19256129 (+) False rbms1a
XM_039795467.1 mRNA downstream 43987 19237252 ~ 19256129 (+) True rbms1a
XM_039794947.1 mRNA downstream 68026 19261291 ~ 19274747 (+) False itgb6
XM_039794948.1 mRNA downstream 70383 19263648 ~ 19274747 (+) False itgb6
XM_039794946.1 mRNA downstream 70520 19263785 ~ 19275805 (+) True itgb6
TU37478 other upstream 623292 18561895 ~ 18568480 (+) False LOC120556478
XR_005638756.1 other upstream 1449038 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 3705351 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 3745380 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 5953953 13235235 ~ 13237819 (+) True LOC120556202
TU38013 other downstream 293981 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 304473 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 304828 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 319091 19512356 ~ 19520218 (+) False ercc3
TU38234 other downstream 1517839 20711104 ~ 20761147 (+) True G28770

Expression Profile