RNA id: TU37890


Basic Information

Item Value
RNA id TU37890
length 350
lncRNA type inter_gene
GC content 0.55
exon number 3
gene id G28492
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19229955 ~ 19230628 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtcgggttggtgcgTCAGAGCCTTTAGAAGAAATCCGCCTTGAACGGGGCCGATGGCGCCGTGTACAATGCGTTACCTGGATTGAGGGCTTGTTCAGATGACCCAGGTTGGATGTGGTTTGTCTTGGTTCATGACCCAACACCATCATGTTGGCATTGATCAATCTGAAGGCGTCGATGACGACCTTTCCTTTGACACTCTGAATGGGGTCCACCACCACTGCTACGGCTCGCTCTGACAGGGCCTCGAAGCTCTGCTGTGTGTTGATGTCCACGCCAGACAACCAACAGCCAAAGCCAGGGTGACTGTGGTACCACCCAACCACcatctctggtCTGCCGGTCTGCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37873 lncRNA upstream 31728 19196746 ~ 19198227 (+) True G28479
TU37867 lncRNA upstream 36690 19191772 ~ 19193265 (+) True G28474
TU37865 lncRNA upstream 38793 19190118 ~ 19191162 (+) True G28473
TU37857 lncRNA upstream 73142 19156597 ~ 19156813 (+) True G28465
TU37790 lncRNA upstream 118268 19109918 ~ 19111687 (+) True G28409
TU37927 lncRNA downstream 92404 19323032 ~ 19344125 (+) True G28526
TU38003 lncRNA downstream 233582 19464210 ~ 19464532 (+) True G28571
TU38004 lncRNA downstream 234422 19465050 ~ 19465340 (+) True G28572
TU38005 lncRNA downstream 235684 19466312 ~ 19466524 (+) True G28573
TU38006 lncRNA downstream 236000 19466628 ~ 19468243 (+) True G28574
XM_039794307.1 mRNA upstream 48047 19174192 ~ 19181908 (+) True atic
XM_039794262.1 mRNA upstream 61142 19164594 ~ 19168813 (+) True mnx2b
XM_039794968.1 mRNA upstream 97143 19126889 ~ 19132812 (+) True stk16
XM_039794969.1 mRNA upstream 98612 19126880 ~ 19131343 (+) False stk16
XM_039794967.1 mRNA upstream 106415 19114414 ~ 19123540 (+) False LOC120555834
XM_039795468.1 mRNA downstream 6617 19237245 ~ 19256129 (+) False rbms1a
XM_039795467.1 mRNA downstream 6624 19237252 ~ 19256129 (+) True rbms1a
XM_039794947.1 mRNA downstream 30663 19261291 ~ 19274747 (+) False itgb6
XM_039794948.1 mRNA downstream 33020 19263648 ~ 19274747 (+) False itgb6
XM_039794946.1 mRNA downstream 33157 19263785 ~ 19275805 (+) True itgb6
TU37478 other upstream 661475 18561895 ~ 18568480 (+) False LOC120556478
XR_005638756.1 other upstream 1487221 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 3743534 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 3783563 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 5992136 13235235 ~ 13237819 (+) True LOC120556202
TU38013 other downstream 256618 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 267110 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 267465 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 281728 19512356 ~ 19520218 (+) False ercc3
TU38234 other downstream 1480476 20711104 ~ 20761147 (+) True G28770

Expression Profile