RNA id: TU37981


Basic Information

Item Value
RNA id TU37981
length 871
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G28557
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19417412 ~ 19418435 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTTTTAGCCTGAACTCATTGATCTGCGCAAGTGAAGCTTCCAGCTGTTTCTTCTTGTTGGATTTACCAGAGCCAGGAACAGTGCGCCGAGGTGGCTTCAGCGAGGACTTCTGGGAGCTTGTTGCAGATGAGGTCAAACCAAAGGGTTTTGCGGAGGTAGACAGCGGGAAAGTCGAGTGGGGCGGAGAGGGGACTGAGTGAGGCTTAGgggaggagcagagggagaggggcAGGTGctgtggggaggaggagggcagCAGTTTGGGAGGTTTGGGAGAGGCAGTGCTGGAGAGTGCCTTTGGAGATGTGGTGAGGGCTATGGGGGAGGAAGACGGTGAAGACTCCCTACGGGGCTGAGAGAGCAGTGCCAGGGGCTTTGAGTTGGCAGCCAGGCCAGTGGACTGGATCACACTGAAGTGTTGCTGTGGGCTCTCTGTCCAGGACCTGGAGCTGTGCAGGGCCAGCAGCGCCGTTTGGGACAAGGCAGGAGGGGAGGCAGAGCAGGGTAAGGGCACAAGGTTTGGGGGCTTGGAGGAGACCTTGTGAGCCTGGGTGTCTTTCTTGTCATGGAGCTCCCCAGAGAGTGGTCTGTCAGTCTTTGCAGTTCCAGTACCCGGTATCAAAACCTTTGTTTTCTTCCTTGTCCGCTTCTCAGAGTCTGACAATTCACTCTGTTTGTCCTCTTCTTCGTCATcctcatcgtcatcatcatcatcttcgtCATCCTCTGCTAAGTCTTCCAGATCACTGCTGAGGGACCCGTCACTTGAGCTGTCTGAGGATGTGCCTGACTCACTGTTGCTCGCCACACAAGTGTCTGCTGGCTTCTTCCGTTGCTTCTGAGTAGAGAGCAAAAAATGCAAGAATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37975 lncRNA downstream 7910 19351997 ~ 19409502 (-) True G28552
TU37963 lncRNA downstream 85897 19330490 ~ 19331515 (-) True G28545
TU37917 lncRNA downstream 123102 19292974 ~ 19294310 (-) True G28516
TU37893 lncRNA downstream 189918 19226132 ~ 19227494 (-) True G28495
TU37856 lncRNA downstream 280802 19135738 ~ 19136610 (-) True G28464
TU37983 lncRNA upstream 2113 19420548 ~ 19435215 (-) True G28558
TU37984 lncRNA upstream 16508 19434943 ~ 19435713 (-) False G28558
TU38063 lncRNA upstream 111137 19529572 ~ 19531634 (-) True G28623
TU38073 lncRNA upstream 131692 19550127 ~ 19551890 (-) True G28632
TU38083 lncRNA upstream 139243 19557678 ~ 19559314 (-) True G28637
XM_039794294.1 mRNA downstream 59045 19343424 ~ 19358367 (-) False marchf7
XM_039794290.1 mRNA downstream 59045 19343424 ~ 19358367 (-) False marchf7
XM_039794293.1 mRNA downstream 59260 19343424 ~ 19358152 (-) True marchf7
XM_039796053.1 mRNA downstream 184572 19227639 ~ 19232840 (-) True psmd14
XM_039794306.1 mRNA downstream 209769 19182528 ~ 19207643 (-) False fn1b
XM_039794265.1 mRNA upstream 40736 19459171 ~ 19495413 (-) True LOC120555523
XM_039794272.1 mRNA upstream 82094 19500529 ~ 19508532 (-) False gtf2f2a
XM_039794271.1 mRNA upstream 82094 19500529 ~ 19508532 (-) True gtf2f2a
XM_039796201.1 mRNA upstream 90250 19508685 ~ 19511713 (-) True gpalpp1
XM_039796124.1 mRNA upstream 835278 20253713 ~ 20279186 (-) True LOC120556479
TU37839 other downstream 291036 19123566 ~ 19126376 (-) True LOC120555836
TU37840 other downstream 291036 19123566 ~ 19126376 (-) False LOC120555836
TU37831 other downstream 355262 19059755 ~ 19062150 (-) False LOC120555695
TU37697 other downstream 697393 18719372 ~ 18720019 (-) True G28345
TU37603 other downstream 996913 18417978 ~ 18420499 (-) True G28269
TU38446 other upstream 2162607 21581042 ~ 21583498 (-) True G28933
TU38813 other upstream 3459196 22877631 ~ 22889042 (-) True G29209
TU38861 other upstream 3497419 22915854 ~ 22919554 (-) False dpep1
TU38988 other upstream 3881107 23299542 ~ 23310746 (-) False spi1b
TU39182 other upstream 4494920 23913355 ~ 23958933 (-) False apba2b

Expression Profile