RNA id: TU38023


Basic Information

Item Value
RNA id TU38023
length 535
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G28590
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19511014 ~ 19511742 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATAATTCACGTGCTCACCTCTCTGGTGAACTCTGTTGTTTCCTGAATCCTGGTGGTAGGGCTGGTCCAAAGAAACCATCATCAGCTTTTTCTTGTGCCTTTTTGTTGTCCACCTTGTCTGCTGATCTTTCTGCAGCTGTGTGTCTTGTTTTTGCTCTTTTGGCCGCCACCTCCTGTTCGCTGTCATCCGAGGAGCTCGACGGTTCTCCCACTTTATAGCCAGGAGGCAAAGCAGGGCCAGAGAATCCTTCATCACTATCAGAGTCTTCATCCCTCTCCTCCTTTACACACATCGGGGGTAAAGCAGGTCTGATTGACGACATATTTTAAACGGAtggcttagctagctagctacttacTGAGTCACGTAGTTTTAGCAATTTCTATCaaagtaaaaaactaaaaactaaaagcttctccataaacaagacaaaacaaagatTCGCTGGAGGAACCTCGAACGACGAATTTCACCTTTCACCCAGGAAGTAAACACAATGAGGCTTCAGTCTGtcaagttagctagctagctaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638725.1 lncRNA upstream 10791 19496214 ~ 19500223 (+) True LOC120555526
TU38015 lncRNA upstream 10794 19496238 ~ 19500220 (+) False LOC120555526
TU38014 lncRNA upstream 10860 19496238 ~ 19500154 (+) False LOC120555526
TU38012 lncRNA upstream 24489 19486270 ~ 19486525 (+) True G28580
TU38011 lncRNA upstream 30580 19480172 ~ 19480434 (+) True G28579
XR_005638757.1 lncRNA downstream 459477 19971219 ~ 19972240 (+) True LOC120555794
TU38108 lncRNA downstream 459768 19971510 ~ 19972240 (+) False LOC120555794
TU38103 lncRNA downstream 481464 19993206 ~ 19993931 (+) False LOC120555792
TU38142 lncRNA downstream 602245 20113987 ~ 20114360 (+) True G28696
TU38170 lncRNA downstream 844330 20356072 ~ 20356354 (+) True G28721
XM_039794267.1 mRNA upstream 52015 19446170 ~ 19458999 (+) True wdsub1
XM_039794269.1 mRNA upstream 52015 19446170 ~ 19458999 (+) False wdsub1
XM_039794270.1 mRNA upstream 52015 19446170 ~ 19458999 (+) False wdsub1
XM_039794268.1 mRNA upstream 52015 19446316 ~ 19458999 (+) False wdsub1
XM_039794215.1 mRNA upstream 66345 19411446 ~ 19444669 (+) False baz2ba
XM_039795788.1 mRNA downstream 614 19512356 ~ 19520218 (+) True ercc3
XM_039796202.1 mRNA downstream 16343 19528085 ~ 19533813 (+) True LOC120556555
XM_039796192.1 mRNA downstream 23955 19535697 ~ 19545656 (+) True LOC120556547
XM_039795388.1 mRNA downstream 37612 19549354 ~ 19561725 (+) True rbm26
XM_039795387.1 mRNA downstream 37612 19549354 ~ 19561144 (+) False rbm26
XR_005638872.1 other upstream 12790 19498093 ~ 19498224 (+) True LOC120556586
XR_005638873.1 other upstream 13141 19497738 ~ 19497873 (+) True LOC120556587
TU38013 other upstream 23481 19487246 ~ 19487533 (+) True G28581
TU37478 other upstream 942534 18561895 ~ 18568480 (+) False LOC120556478
XR_005638756.1 other upstream 1768280 17724548 ~ 17742734 (+) True LOC120555788
XR_005638835.1 other downstream 614 19512356 ~ 19520218 (+) False ercc3
TU38234 other downstream 1199362 20711104 ~ 20761147 (+) True G28770
TU38307 other downstream 1884471 21396213 ~ 21403450 (+) True G28826
unassigned_transcript_140 other downstream 3035459 22547201 ~ 22547272 (+) True trnag-ucc_7
TU38801 other downstream 3252977 22764719 ~ 22881652 (+) False ankrd11

Expression Profile