RNA id: XM_039794868.1


Basic Information

Item Value
RNA id XM_039794868.1
length 6232
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC120555792
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19772119 ~ 19993954 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACACCCCTCCTATGGGTTTAAACAGAGTTAGTGCAAGATATTCTGCTCCGGGAGTGAGAGTGCAAGGATAAACGGCACATGGGCTACGCGCTGCGCATCGGTGTCACACTGAACAGCCTTTATATTCCGGGTTGGCATTTCCAAGTGGGATTGACTGagatttctcttttttaacCTTGTGTATTTGCCGGCTGATTATTGATGGAGCCACATGAACTTGAAACATGACGGGACACCAGTGTCTCCTCTTGCGTTCACCTCTTCGGCGCCTTCACCTTAACAGGTAGCCgggggaagaagaaaaaaaaaaaaaagaaaacgccgGTTTTCTCGGGACCTGTACGGGAGATGAGCATTGATTTTTCGGACCGGTTCTAATGGAAGACGCCACAAACCGCTGACCACCTGGCTGTGTCTGCTGGAGAGCGACGCTGATCACCACAATCACTGCAGGTCGCACAATAAGATCCTGTCCATTCCTGAAGTTAAATGGGGGAAACGGAACTGCGACATATATGCAGCCTCTAATTTTCCCCAGTTTGTGCGACCAGCTGCTTTTACCCCAAACCTGTTCTTGAGTCTGATTACTCCTGCGGGGcgattttttctctctctctttcctggaCCCAAAGCTTGATTTGACTGAGAAGGATATCTTTCCCCGAATAAGCTCGCAGGCACACTGGAAGAGAAGACTATGAGCTGACACACTCCAGTTTTTCTCCTGCGCTGGAACGGATTTGGGTTTGTCCTGGGAAGATTCCTGCCATCACATGCAAGGAGTCCCTGCCTGTAACAACATTGCatagagaagaaaaaaataaaaacacctttTAAGTTGCAAAGGCTGGAAACACATTTACGCGGTCATGGATCTAAAAGACTATTACCTGTTGGGCACCCTACTTGCCTGCATATGGCTCGATCCTTCAATAGCCCAAGAGCTAATCTACCCCATCAGAGAGGAGTTGCAAGAAAATGTCCTCATTGGAAACATACCAAAGGACTTAAACATTTCCCATACAAATGCTGCCACTGGAGCAAGTGCTAATCTTGTGTACCGACTCGTCTCTAAAGCAGGAGATAACCCACTGGTCCGCGTTCTGAGCAGCACAGGCGAGATATTCACAACATCAAACCGAATTGACAGGGAGAAGTTGTGCCCCGGTCCCTCGTTTGAGGACAGCGAATGCTCCTTTGAAATTGAAGTGGTCATCCTCCCTAATGATTATTTCAGGCTGATTAAGATCAAAATAATTGTCAAAGACACAAATGATAATGCCCCCATGTTCCCATTCCCTGTGATCAACATCTCTATCCCAGAGAACACGCTCATTAACAGCCGATTTGCTATTCCTTCTGCCACTGACCCGGACACTGGCCCCAACAGTGTCCACAAATATGAGCTGATCAACGGGCAAAGTGCCTTCGGCTTAGACATAGTCGAAACGCCTGAGGGGGAGAAGTGGCCCCAGCTCATTGTGCAGCAGAATCTGGACAGAGAGCAAAAGGATACATACGTGATGAAGATCAAAGTGGAGGATGGTGGCAGTCCACAGAAATCCAGCACTGCCATTCTCCAAGTCACAGTAACGGATGTCAATGATAACAGACCAGTGTTCAAAGAGAGTCAGATAGAAGTGCATATACCAGAAAACTCTCCCATTGGCACGTCTGTTGTGCAGCTTCAGGCCACAGATGCAGACATAGGAGCAAATGCAGAGATACGTTATGTATTTGGGACTCAGGTGTCTCCTGCTACAAAAAGACTTTTTGCATTAAATACAACATCTGGCCTCATTACAGTGCAGAGGCTCCTGGACAGAGAGGACACTGCTATTCAtaagctctctgttttagccaGTGATGGCAGCTCTAGTCCTGCCAGAGCTACTGTTACCATAAATGTGACTGATGTTAATGACAATCCACCTAATATAGACCTGAGATACATAATCAGTCCCATTAATGGCACGGTTTTCCTCTCGGAGAAGGATCCCATCAATACCAAGATCGCTCTCATCACAGTGTCAGACAAAGACACTGATATCAACGGCAAGGTCATTTGTTTCATAGAGAAGGATGTGCCGTTCCATCTCAAGGCCGTGTACGACAACCAGTATCTGTTAGAGACATCTGCGCTGCTTGACTATGAAGGGACCAAGGAATACAACTTTAAAATCGTAGCTTCCGACTCTGGAAAACCAAGTTTGAATCAGACTGCCTTGGTAAGAGTGAGGCTGGAGGATGAGAATGACAACCCGCCTATATTTACCCAGCCAGTTATTGAGCTGGCTgtcatggaaaacaacaaacgtgACCTGTTCCTTACTACTCTCAGCGCCACAGATGAGGACAGTGGGAAAAACGCAGAGATAGTTTATCAGCTGGGACCAAATGCATCATTCTTCGATCTCGACCGCAAAACTGGGGTCTTGACTGCATCCAGAGTTTTTGACCGGGAGGATCAGGATCGGTTTCTCTTCACTGTAACGGCGAGAGATAACGGGACGCCCCCTCTGCAAACGCAGGCAGCCGTTATTGTAACTGTGCTGGATGAAAATGATAATAATCCTAAATTCACACATAACCACTTTCAGTTCTTTGTGTCTGAGAATCTTCCTAAATACAGCACAGTGGGGGTGATAACTGTGACAGATTCAGATGCCGGAGAAAATGCTGCTGTTTCTCTTTCCATACTGAATGATAATGAGAACTTTATACTGGATCCTTATTCCGGGGTGATAAAATCTAATGTGTCATTTGATAGGGAGCAACAGAGCTCCTACACGTTTGATGTCAGGGCTGTGGACAGTGGCAGGCCTCCCTGCTCCTCAGCTGCCAAGGTGACCATCAATGTCATCGACGTGAACGACAACACCCCCATCGTCATTTACCCCCCCTCCAACACATCTTTCAAGCTCGTCCCACTCTCCTCTATCCCAGGATCTGTGGTAGCAGAGGTGTTTGCTGTAGACGGTGATACAGGGATGAATGCAGAACTCAAATACACCATTGTGAGTGGGAACAACAAAGGTCTGTTTAGAATTGACCCGGTCACAGGGAATATTACTCTGGAGGAAAAACCAGCAGTGACTGACATAGGCTTGCACCGATTAGTGGTCAATATCAGTGACCTGGGATATCCCAAATCTCTCCATACGCTGGTGTTGGTATTTCTGTATGTCAATGACACCGTGGGCAACTCAACACTCATCTATGATCTCATCCGACGCACCATGGAGACCCCAATTGACAGAAACATCGGCGAAAGCAGTGAAACTTATCAAAGTGGCGACTATTTAACCATAATGATAGCCTTTGTTACCGGCGCCTTAGTGGTGATTATTGTCATCTTTGTCACTGTGCTTCTGCGCTGCCGCCACGCCTCCAGGTTCAAAGCTGCACAGAGGAAAAAACAGGGGGCCGAGTGGATGTCCCCCAACACAGAGAACAAGcagaacaagaagaaaaagCGCAAGAAAAGGAAATCCCCGAAAAGCTCCCTGCTCAACTTTGTCACCATTGAGGGGAACAAACCTGACGACCCTGCCCACGAGCCAATCAACGGAACCATCAGTCTGCCCACCGAGCTGGAGGAGCAAGGGATTGGACGATTTGATTGGAATGCCACACCTACCACAACCTTCAAACCTAGCAGCCCAGACCTGGCCCGGCACTACAAGTCAGCCTCACCGCAATCGGCCTTCCACCTCAAGGCCGACACGCCGGTCTCAGTGAAGAAGCATCACGTGATTCAGGAGCTCCCATTGGATAACACATTTGTTGGGGGCTGTGACACCCTTTCCAAGAGGTCCTCCTCGAGCTCCGACCACTTCAGTGCCTCAGAGTGCAGCTCCCAAGGAGGTTTCAAGACGAAGGGGCCCATGCACACCAGACAGCAGGGAACATTAACTCGTGCCCGAACTGAACTGAACCCTGAATATCTGGACCTCCGTCCGCGAGCCGAGCTGAACCCTGAATATTGGACCCCTTGCACCCCTTTATCGCAGCGGCGCGTCACATTTCACCTGCCGGATGGCTCCCAGGAGAGCTGCAGTGACAGCGGTCTGGGGGACCACGAGCCTGTAGGCAGTGGCTCCCTCCTCACACAACCTCTCCCTCTGGTGCAGGCGCAGGACGACTTCTACGAGCAAGCCTCCCCTGATAAGAGGACTGAAGCTGACGGCAACTCCGATCCCAACTCTGATGGACCCCTGGGACCTCGTGGCCTAGTGGAAGCTACAGAGATGTGCACACAGGAATGCCTAGTCCTGGGACATTCAGACAACTGCTGGATGCCCCCAACATTGGGAACATACCATCAGCCCAAATCCCCTGTGTCTAGCTTTGGGTCTCAGAGAGAGTGGGGTCCCAAGGAAAAACTTCTAAATGGACATAATCTGACCAGAACCTGGAAAAATGAGAGTGGGCGGTCAGAGCATTTTGGTGACAGGAAGCAGTTTGGGAGTGGAGAGGGACACTTCACCAACAGTGGCATGGCTGATATTCCACTGGTAAGTCTGAAGTCCTGCCAGCCAGCCTCCTGCCCAGACAGCCCCAAGGACCAACAGCTATAAGACGGACTTTGCTTCTGTGCTGTGAGACGGCCACCTGAGCCCCTCTCCTGttaattgttttctttcttgtttcATCTCTTCCCACTTACGTTGATGCTTCTGCAGTGTGATAGCCACATGTACTATGTAGGCCACAAAACTATAGTGCTTATGCTGTGTTCTCTACAATACAACTTTACTATGGCTCTAGAGGAAACCTCTTTTTTATGACTCTCCATGGATTTCTTCAACATAAAATGTCCTGTTCACTTTGTGTGTGATTTGGACAAGTGGATGAAGGACATGTGTCaaatggagaaaatgaaaacaaattacaagaaaaaaaaaagactactaTGGCTGACCAGTATATACAAATGTTTGTGGTGTGGTTGTTATTGAGTTGTTCAGGACTATATTAATCAACACAGTCAAAGAAAATGGAATTACATTTCAGAAAGTGTTGTTCTAATAACACTGTTAGTGGACACTTGTTTATTCTGtcattgtctgtgtgtttgtaaatAAGACTTATTAACCACTATCATGTACCCGTAATAACCACAGTGAATAGGACAGTTCTTGACTGTTGTCATCATGATGGCTTGTCATCAGGATTTGGGATTTCAACTAGACCAAGATCTATAATGTGACATAATGTACAACAAGAAAACATTTACCTAATTGTTTAAAAACCCAATGCTTGATTTTAAATTCCCCTAGTATACTCAGTGTTGCCCATATTTcataatcattttatttaagCACTGCAAAACCACAGGCaaacctttttgaaaaaaaacaacattttgtaTGAAGGATGTCATTGCTCAATATGTGcattataaaaatgaaaagCTCTGAAAGCTCTCCTCTATAAACTGATTTTGAAAGTACAATTAAATAGCAATATATTTGTAAATGGCTAAATGTTTTATCTAATGTTGATCTTATTACTGTATAGATTTTATTCAAATTGTGATTTAACTGAGTGCAATCCCTCAGTAGTACCTGCAATTTATTgacatatgtgtatatattgtttcCACATATTATTTTCCATACGTAAGAAAACACAGGTTAAGATAAGACTTTAATCACTGTGCCTTCATGATGTTTCTTCAAACACTGAATTGTGCTTATTTAAATGATGAGAACATGTTGGCTACAAAGACTATCCTGTCAGATAATCAAATGCCTTATGCATTAAATGTTTGCCAAATTTAGAGACAAAATCACACAGATATTAAAGTACAAAATCAAGTCGTTGGTactaaagaaaaacacaaaggcaTGTGCAGATAATGGGTAACCGGGAAAGATCATCTGTCATTCCACTGTCTGAAAAGCTTGGTTTTATTCCACAGCATGGAAATCAAGTTACACAATGCAATAGCATGCTAAAAGATATAGCTTTTAAAAATTAACTTGATCCTTTTTgtgtaattttattttgttggaaTAGAGTTGATTTGTGCATTAAGGAGACATTCAgtttgtaaagcactttcatATTTATGTCACAATATAAAGAAGTTAAGTGGGATGGAGTGATTTGCTTATCGCGGTATGTTTGTCAGTTTGTGAGGGTGTTTGACATCACAGATACTGAAACAGTTAATCCTTGTTACTCTACAGGTATACAGCTACTGCAATAAATGTTTTAATCATG

Function

GO: NA

KEGG:

id description
K16498 PCDHD1; protocadherin delta 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38023 lncRNA upstream 260377 19511014 ~ 19511742 (+) True G28590
XR_005638725.1 lncRNA upstream 271896 19496214 ~ 19500223 (+) True LOC120555526
TU38015 lncRNA upstream 271899 19496238 ~ 19500220 (+) False LOC120555526
TU38014 lncRNA upstream 271965 19496238 ~ 19500154 (+) False LOC120555526
TU38012 lncRNA upstream 285594 19486270 ~ 19486525 (+) True G28580
TU38142 lncRNA downstream 120033 20113987 ~ 20114360 (+) True G28696
TU38170 lncRNA downstream 362118 20356072 ~ 20356354 (+) True G28721
TU38206 lncRNA downstream 585188 20579142 ~ 20580115 (+) True G28745
TU38241 lncRNA downstream 783589 20777543 ~ 20777816 (+) True G28776
TU38242 lncRNA downstream 803458 20797412 ~ 20797671 (+) True G28777
XM_039794113.1 mRNA upstream 154667 19614845 ~ 19617452 (+) True pou4f1
XM_039795915.1 mRNA upstream 158394 19606123 ~ 19613725 (+) True obi1
XM_039795388.1 mRNA upstream 210394 19549354 ~ 19561725 (+) True rbm26
XM_039795387.1 mRNA upstream 210975 19549354 ~ 19561144 (+) False rbm26
XM_039796192.1 mRNA upstream 226463 19535697 ~ 19545656 (+) True LOC120556547
XM_039794105.1 mRNA downstream 448445 20442399 ~ 20446773 (+) True LOC120555422
XM_039794835.1 mRNA downstream 510144 20504098 ~ 20692974 (+) True LOC120555780
XM_039794839.1 mRNA downstream 510144 20504098 ~ 20692974 (+) False LOC120555780
XM_039794838.1 mRNA downstream 510144 20504098 ~ 20692974 (+) False LOC120555780
XM_039794837.1 mRNA downstream 510144 20504098 ~ 20692974 (+) False LOC120555780
XR_005638835.1 other upstream 251901 19512356 ~ 19520218 (+) False ercc3
XR_005638872.1 other upstream 273895 19498093 ~ 19498224 (+) True LOC120556586
XR_005638873.1 other upstream 274246 19497738 ~ 19497873 (+) True LOC120556587
TU38013 other upstream 284586 19487246 ~ 19487533 (+) True G28581
TU37478 other upstream 1203639 18561895 ~ 18568480 (+) False LOC120556478
TU38234 other downstream 717150 20711104 ~ 20761147 (+) True G28770
TU38307 other downstream 1402259 21396213 ~ 21403450 (+) True G28826
unassigned_transcript_140 other downstream 2553247 22547201 ~ 22547272 (+) True trnag-ucc_7
TU38801 other downstream 2770765 22764719 ~ 22881652 (+) False ankrd11
TU38802 other downstream 2873766 22867720 ~ 22881366 (+) False ankrd11

Expression Profile