RNA id: TU38162


Basic Information

Item Value
RNA id TU38162
length 1640
lncRNA type sense_over
GC content 0.47
exon number 4
gene id LOC120556571
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 20141233 ~ 20315422 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAACGTTTAGGTACATACTGCCACCAACTTTACCCTTGAATCTGTCATGGTCTATTTCTTGGTTTTGTATTGGTTATCCAGATGCCAGTCGTGTGTATTAGCCAATCAGTGATGAGTACTGTAATCTACGGAGTAGATGGGTTGGACAAAATCGAAACGAGagacaagaaataataaatgatgAGCGGAGCGAAGCAAAACACAAACTCGTTGGCACAACGGCGTAACCAAGCGTGGACTGTTGCTAGCTGTTAGCTTTCACCCTCACAAGAGACCGAGTGTGTGGGGAAACACATTTTGCATCAACTTTCTGATGTCCTTCTGATGCTGCCCCACACTGCTACAGTGTCAGGACTGAATTCCCGCTGCATGCGAGGAGGAGCCAGCTTGCTTGCTGCACGCGGATAAACCACACCACTGGACAGAGTGTTTGCAAGACTGTTCGCTAACAGCTTCCTGATTTTACAAGGAACAGAGAAACGCTGACTCTGCTGCTCCCGTAAGAGATGCCGGTGCTCAGCTCCAGCGGCTGGCTCTGCGGGCTCGCAGGACGGCCCCGTCCTGTCCGCCTTGCCTGGCATCCAGTCACCGCTCGCTGGCATGAATTCCAAGTTTGAAGTCTTGGAGTCCGGTGCGAAATCAGCCGCCCCGCTTCCGTCTACCTCCACTGCTAGACCTGAGCCAGTGTCACTAATGGATGATGTCATTCCAGCAACGGGATCACATTCCCTCAGAGAACGCTGGGTAGTGCAGTTCCAAAGCGCAAATAGACTTTTATATTTCGCAAATCGTTGTAGTTAACGACGTTTCTGACCACACTTGGACgcagctttatttcacaggAGTTCGGTGCttgtgtttaattttttttttttaccctggtAGTGTTTTGAAGTTCTTGTGTCAGCGATAAAGGCAGTGATGTTCCCTTTTTACTGTACGAGATTCTCACACTGCCTCATAATGTAGCCCCCAGGAACAGCGGCATGTCTTGAAGCAACCATGGGTTTAGCGGCCAGTGGTGGAATTGTAACCGCTGCCCCAGAAAGACTTTGCCCATAGACTGTATTTCACGTTTATTTTGAGGGGGTGCATCAGCTTACCAGTCCGAACACTTGGATGGTCCTTGTTCAAACCatcatgtttaaaataaaaaatttaaattgataaataaaaaaataaatacacatcgCATTCAAGCGCATGGTTCTCCTGAGTTCCTGTAGCTGTAATTATGGTTATAATGGCATACCGTAAGTTCTGGCAGGTCACGGAGTCAAGCTTGGCTATTATCTCAGCTCATAGCTGATAGTTCCTAAACCAGCACACCAGCTGATGGCTCAGCCGATTTCCTCTTTTGATTGGATTTCCAAATAGCGTGCTCTATTTAAACTGCTTTTCCCAGCCTACCTTGCTGCATCTATGCTACCACCTCAACCTCAGCTCCTCCTTTTAAATTTATGTTATCTGACTTAATCAATGCCGTGTCTCTGTCATTGATGCCACTCTGTTCTGTACCCTATGGGGATCCTGTACTACTGTTCTCCCTGCTTAAGGCTTTCCATATATGCACATGGAAGGGCAGTGAGGTGTGCTCTCCCTGTCTTAACTAAAACTTTGAGGCCAGTGATGATTTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38143 lncRNA downstream 26871 20114023 ~ 20114362 (-) True G28697
TU38124 lncRNA downstream 76523 20064370 ~ 20064710 (-) True G28678
TU38123 lncRNA downstream 77588 20062533 ~ 20063645 (-) True G28677
TU38120 lncRNA downstream 147279 19991932 ~ 19993954 (-) True G28674
TU38116 lncRNA downstream 217235 19923735 ~ 19923998 (-) True G28670
TU38171 lncRNA upstream 40625 20356047 ~ 20356344 (-) True G28722
TU38175 lncRNA upstream 108997 20424419 ~ 20424739 (-) True G28726
TU38211 lncRNA upstream 164453 20479875 ~ 20480490 (-) True G28747
TU38212 lncRNA upstream 168019 20483441 ~ 20484014 (-) True G28748
TU38239 lncRNA upstream 449289 20764711 ~ 20764937 (-) True G28774
XM_039796201.1 mRNA downstream 629520 19508685 ~ 19511713 (-) True gpalpp1
XM_039794272.1 mRNA downstream 632701 19500529 ~ 19508532 (-) False gtf2f2a
XM_039794271.1 mRNA downstream 632701 19500529 ~ 19508532 (-) True gtf2f2a
XM_039794265.1 mRNA downstream 645820 19459171 ~ 19495413 (-) True LOC120555523
XM_039794293.1 mRNA downstream 783081 19343424 ~ 19358152 (-) True marchf7
XM_039795473.1 mRNA upstream 160205 20475627 ~ 20497725 (-) False tdrd3
XM_039795472.1 mRNA upstream 160205 20475627 ~ 20497725 (-) False tdrd3
XM_039795474.1 mRNA upstream 160205 20475627 ~ 20497725 (-) True tdrd3
XM_039795143.1 mRNA upstream 605522 20920944 ~ 20990225 (-) True pcdh17
XM_039795979.1 mRNA upstream 1037109 21352531 ~ 21362693 (-) True LOC120556394
TU37839 other downstream 1014857 19123566 ~ 19126376 (-) True LOC120555836
TU37840 other downstream 1014857 19123566 ~ 19126376 (-) False LOC120555836
TU37831 other downstream 1079083 19059755 ~ 19062150 (-) False LOC120555695
TU37697 other downstream 1421214 18719372 ~ 18720019 (-) True G28345
TU37603 other downstream 1720734 18417978 ~ 18420499 (-) True G28269
TU38446 other upstream 1265620 21581042 ~ 21583498 (-) True G28933
TU38813 other upstream 2562209 22877631 ~ 22889042 (-) True G29209
TU38861 other upstream 2600432 22915854 ~ 22919554 (-) False dpep1
TU38988 other upstream 2984120 23299542 ~ 23310746 (-) False spi1b
TU39182 other upstream 3597933 23913355 ~ 23958933 (-) False apba2b

Expression Profile