RNA id: TU38234


Basic Information

Item Value
RNA id TU38234
length 593
RNA type TUCP
GC content 0.52
exon number 3
gene id G28770
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 20711104 ~ 20761147 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cggccttcatcattagacgtgagttaatttcacatcagcagtactgGCAAGTCCGACTACTGGGTCAGCTAGAGGAGTGCACTCCAGAGGCTGGTAGACATTCAGTGTTTTGCTCAAGCACTTCAGCTGGATGAACGCTTGTCATCTCTTAGGTTTAAACCCAGGCCCTCCAGTTGAAGGAAGATGTCCCTCCTCACTTCACCACCTGCTGCCCTGTCCTGTGTGCATtctgggaccgaaTGCtgtcctccaagatgacaacgctCGCCCCCACAGCACGGGGTTTATCAGggactacctccagaatgtgggagtggagaggatggaatggcctgccagcagtcctgacctcaaccccattgaacacttgtgggatcagcttgggcgtgctgtttgtgccagagtgaccaacacaaccacgttggctgacttgcgacaaatgctggttgaagaatgggatgccatcccacagcagtgtgtgaccaggctggtaaCCAGCAttaggaggaggtgccaggctgttgtggctgtgtatagTTCTTCCATacctactgaggctcctgtttgtgaaattaataaattgttgaattgcc

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38206 lncRNA upstream 130989 20579142 ~ 20580115 (+) True G28745
TU38170 lncRNA upstream 354750 20356072 ~ 20356354 (+) True G28721
TU38142 lncRNA upstream 596744 20113987 ~ 20114360 (+) True G28696
TU38103 lncRNA upstream 717173 19993206 ~ 19993931 (+) False LOC120555792
XR_005638757.1 lncRNA upstream 738864 19971219 ~ 19972240 (+) True LOC120555794
TU38241 lncRNA downstream 16396 20777543 ~ 20777816 (+) True G28776
TU38242 lncRNA downstream 36265 20797412 ~ 20797671 (+) True G28777
TU38243 lncRNA downstream 65077 20826224 ~ 20826477 (+) True G28778
TU38260 lncRNA downstream 312394 21073541 ~ 21073755 (+) True G28792
XR_005638733.1 lncRNA downstream 381578 21142725 ~ 21143190 (+) True LOC120555568
XM_039794835.1 mRNA upstream 18130 20504098 ~ 20692974 (+) True LOC120555780
XM_039794839.1 mRNA upstream 18130 20504098 ~ 20692974 (+) False LOC120555780
XM_039794838.1 mRNA upstream 18130 20504098 ~ 20692974 (+) False LOC120555780
XM_039794837.1 mRNA upstream 18130 20504098 ~ 20692974 (+) False LOC120555780
XM_039794840.1 mRNA upstream 18130 20504098 ~ 20692974 (+) False LOC120555780
XM_039796125.1 mRNA downstream 525696 21286843 ~ 21287974 (+) True LOC120556481
XM_039795974.1 mRNA downstream 570006 21331153 ~ 21352064 (+) True nkpd1
XM_039795976.1 mRNA downstream 570006 21331153 ~ 21352064 (+) False nkpd1
XM_039795975.1 mRNA downstream 570746 21331893 ~ 21352064 (+) False nkpd1
XM_039795984.1 mRNA downstream 611010 21372157 ~ 21374142 (+) True trmt10c
XR_005638835.1 other upstream 1190886 19512356 ~ 19520218 (+) False ercc3
XR_005638872.1 other upstream 1212880 19498093 ~ 19498224 (+) True LOC120556586
XR_005638873.1 other upstream 1213231 19497738 ~ 19497873 (+) True LOC120556587
TU38013 other upstream 1223571 19487246 ~ 19487533 (+) True G28581
TU37478 other upstream 2142624 18561895 ~ 18568480 (+) False LOC120556478
TU38307 other downstream 635066 21396213 ~ 21403450 (+) True G28826
unassigned_transcript_140 other downstream 1786054 22547201 ~ 22547272 (+) True trnag-ucc_7
TU38801 other downstream 2003572 22764719 ~ 22881652 (+) False ankrd11
TU38802 other downstream 2106573 22867720 ~ 22881366 (+) False ankrd11
TU38851 other downstream 2230990 22992137 ~ 22992502 (+) False LOC120555548

Expression Profile