RNA id: TU38243


Basic Information

Item Value
RNA id TU38243
length 254
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G28778
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 20826224 ~ 20826477 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgcactcagctggctccactcctacctttccaacagatcccatttcatctctctccacaaccacacctctgccacagccacagtcactcaaggtgttccccaaggctccgtacttggccccctcctcttcatcatctacatcctccctcttggtcagatactccgccacttcaacctggacttccactgctatgctgacgacacccagatctacctcagcaccaaatccccccacaatcctcccctctcccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38242 lncRNA upstream 28553 20797412 ~ 20797671 (+) True G28777
TU38241 lncRNA upstream 48408 20777543 ~ 20777816 (+) True G28776
TU38206 lncRNA upstream 246109 20579142 ~ 20580115 (+) True G28745
TU38170 lncRNA upstream 469870 20356072 ~ 20356354 (+) True G28721
TU38142 lncRNA upstream 711864 20113987 ~ 20114360 (+) True G28696
TU38260 lncRNA downstream 247064 21073541 ~ 21073755 (+) True G28792
XR_005638733.1 lncRNA downstream 316248 21142725 ~ 21143190 (+) True LOC120555568
TU38272 lncRNA downstream 494835 21321312 ~ 21321625 (+) True G28804
TU38282 lncRNA downstream 530855 21357332 ~ 21456540 (+) True G28812
TU38321 lncRNA downstream 583175 21409652 ~ 21412834 (+) False LOC120556583
XM_039794835.1 mRNA upstream 133250 20504098 ~ 20692974 (+) True LOC120555780
XM_039796125.1 mRNA downstream 460366 21286843 ~ 21287974 (+) True LOC120556481
XM_039795974.1 mRNA downstream 504676 21331153 ~ 21352064 (+) True nkpd1
XM_039795976.1 mRNA downstream 504676 21331153 ~ 21352064 (+) False nkpd1
XM_039795975.1 mRNA downstream 505416 21331893 ~ 21352064 (+) False nkpd1
XM_039795984.1 mRNA downstream 545680 21372157 ~ 21374142 (+) True trmt10c
TU38234 other upstream 65077 20711104 ~ 20761147 (+) True G28770
XR_005638835.1 other upstream 1306006 19512356 ~ 19520218 (+) False ercc3
XR_005638872.1 other upstream 1328000 19498093 ~ 19498224 (+) True LOC120556586
XR_005638873.1 other upstream 1328351 19497738 ~ 19497873 (+) True LOC120556587
TU38013 other upstream 1338691 19487246 ~ 19487533 (+) True G28581
TU38307 other downstream 569736 21396213 ~ 21403450 (+) True G28826
unassigned_transcript_140 other downstream 1720724 22547201 ~ 22547272 (+) True trnag-ucc_7
TU38801 other downstream 1938242 22764719 ~ 22881652 (+) False ankrd11
TU38802 other downstream 2041243 22867720 ~ 22881366 (+) False ankrd11
TU38851 other downstream 2165660 22992137 ~ 22992502 (+) False LOC120555548