RNA id: TU38327


Basic Information

Item Value
RNA id TU38327
length 2841
lncRNA type sense_over
GC content 0.42
exon number 2
gene id grk1a
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 21421110 ~ 21433147 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctcacctCAGGTTTCATGGCTCCAGAGCTGCTGAAAGGAGAAGAGTATGACTGCTCCGTAGATTACTTTACTCTGGGGGTCACTCTGTATGAGTTCATGGCCGCCAAGGGACCCTTCAGGACACGAGGAGAGAaggtaaatatactgtatgaccTGTTTTTCCCATTCCCAATCCACGTTTGgagctgtttttatttatttattggttgTGTGCTCGAAAGATGTTTTGTAAATTCGTTTGGCTCTCTGCCTCTTTCCTCACAGTCTTCTTAGCTCTTACATCTTTCTGTGGCGATGTGTAAAGCTTTTACTTTACTGTGTGATAATACAGTAACAGTCTTTTTAAGCTGTGATGTCTCAACTTTGCCCACTTGTGGCCTGTTGCAGATTCAGCTCTGAAATATGAAGccctcattttcttttcttttttaaagattattttttggggcattttaggcctttaattcgaCAGGACAGATGatgacatgaaaggggagagagaaggggaatgacacagcctgacaagccagacccacatcaagatgttgggtctgggaactcaccattggcagggctcaatccgaggggcgggataaacggttgtctttcaaattccctctgaagtcatagccaaccagagcaatgcTAGTTGatggattaaacttttgccgtatccggtcggcaaaactctgaacacatcttacttttttaagaatgacttcagtgcttaactccaagtcttccagagtcgcggccaaggCCGATATAAAAGACCGCtattcttctttgttttcaagtagcagggaattcatgcGGAACCgccgcaactctgccgtccttatgttaatAAAGCTTGCCCACCagctctatacacaatgtgattggcctgaccagaatttgttttttctaGCTCGCAAGCCAgtggagagttgctagactgaccctggctgcaaattacatttgctgccactagggtgcgtctagatttctagactaggaatgacatgcagcaaagggctgcaggtcggagttgaacctgtgaccgctgcgtcgaggagtaaacctatatatatgtgcgcctgctctaccaactgaggtAACCCGGCCATGTATGAAGACCCTCAtttaaccagtggtggaagaagtactcataTTTGTCATATAAAGTAGTAAACATGCATTACATGTtcggtccatatgtgtttgtgttatgtggtgaatgtgaaaatgaactgctacctcctttgtcagctctagccactgaaaagaaataagcagagaaatcaggccaattacaaaagctggtcagtctgacgtggtgttaCCTGAGCTCATTCCTGTTCATTAGCttgcccagttgcgctgggtaaaggatgctgatagccagactctcattggctagctgttagccaatcagagtcaagcaccttagcttgttgaatattaatgagaactggcacaaatcgagctgagtcttcctgtaggctttctataccacgctagaatggcttgaaacaatgtaaccaaggcattttttccacaaaaaatgttacagagtccacggTAGAACTttagacattaccacaaagtaatgaaacaCGTGTGGCAGGGTACCTTTAAGCATGTATGTGCATTAATGTTGTAATATTTACTTTATAGGGGATTTAAATTTTTTAGATAATATTTGGATGATGTGCATGAATACTCTGAATTTAAATGCaggtaaataataaataagacgTGCAGGTAAATGCCTGATGGTTATTCTCTTTAAAGCTTTCCTTTCTGGTACAAATCTTTCTCTCCTGTACTTTGTGTTGTTCCGAGGTGGAGAATAAGGTGTTGAAGAAGCGCATTCTGAATGATCCAGTAACATATCCAGAGAAGTTCAGCGAGAACGCCCGGTCCATCTGTGAGGGTTTGCTGTTCAAAGAGTTCGACAAGAGGCTCGGCTTCAAAAACGGATCGTGTGACGAGATCAGGGCGCACGCCTTCTTCAGCGAGATCAACTGGAGGAAACTCAATGCAGGGATCCTCAGACCTCCTTTCGTGCCGGACTCAAAGACAGTTTATGCCAAGAACATTGACGATGTCGGGGCCTTCTCCACGGCTAAAGGCGTGCAGCTTGAAGACAAGGACAATGATTTTTTTGATGAGTTCGCCTCGGGGAACATCTCCATCCCCTGGCAGGAAGAGATGATCGAGATGGGGATCTACGGCGAGCTCACAGTCTGGGGAGCTGACGGCGCTTTGCCCAACGACCTGCGGCGTGAATCCATCCTGGAGCAGCCACACAAGTCTTCCACATGCTCAGTGTCGTAAGAGGCTACAGTGAATGAACAGTTCATTTCTTACTTCAGACATCAATACATTTTAGTGATGAGGCTCAGTTTGGAGGTGAATGAATGTCTCTAATTTTAGTTTCTAATAGATAATTAGATACTTACAGTACTACCTGCACTTTTTTGGCCATTATTTTGGTTTTTACTTTTAACCCTTTTCTGTAaaattgtgttgtttttatgtaacttttttttttctttattgctGCACACTTTAAACTTATTATCTAATTGTCTGTTTCTAACATTGTTGGATTTTTTGAAGTAGGAAtgatcattatatatatatatatatatatgtatgtgtgtgtgtgtgtgtgtgtatatatatgtatatatatgtatgtgtatatatatgtgtatgtatgtgtgtgcgtgcgtgactGAACTGCAAGTTAAAAAGCATGTCTTTTTGCAGCTTCAGACGTGTAAATTGACTTGTATCCATTACTGCAGAGATGTGTtatcaaatttaaataaatatttttactttaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638869.1 lncRNA upstream 15430 21409853 ~ 21413209 (+) False LOC120556583
TU38321 lncRNA upstream 15805 21409652 ~ 21412834 (+) False LOC120556583
TU38322 lncRNA upstream 15805 21411053 ~ 21412834 (+) True LOC120556583
TU38272 lncRNA upstream 107014 21321312 ~ 21321625 (+) True G28804
XR_005638733.1 lncRNA upstream 285449 21142725 ~ 21143190 (+) True LOC120555568
TU38332 lncRNA downstream 92445 21525592 ~ 21562797 (+) False tpp2
TU38368 lncRNA downstream 168449 21601596 ~ 21603906 (+) False dcun1d2b
TU38369 lncRNA downstream 168449 21601596 ~ 21603651 (+) False dcun1d2b
TU38370 lncRNA downstream 168449 21601596 ~ 21603848 (+) False dcun1d2b
TU38371 lncRNA downstream 182569 21615716 ~ 21616158 (+) True G28875
XM_039795981.1 mRNA upstream 38092 21381209 ~ 21390547 (+) True ercc5
XM_039795983.1 mRNA upstream 39845 21381209 ~ 21388794 (+) False ercc5
XM_039795984.1 mRNA upstream 54497 21372157 ~ 21374142 (+) True trmt10c
XM_039795974.1 mRNA upstream 76575 21331153 ~ 21352064 (+) True nkpd1
XM_039795537.1 mRNA downstream 1112 21434259 ~ 21453303 (+) True LOC120556135
XM_039794536.1 mRNA downstream 111351 21544498 ~ 21562814 (+) True tpp2
XM_039794537.1 mRNA downstream 111351 21544498 ~ 21559256 (+) False tpp2
XM_039794550.1 mRNA downstream 163184 21596331 ~ 21603868 (+) False dcun1d2b
XM_039794549.1 mRNA downstream 164036 21597183 ~ 21603868 (+) True dcun1d2b
TU38307 other upstream 25189 21396213 ~ 21403450 (+) True G28826
TU38234 other upstream 667492 20711104 ~ 20761147 (+) True G28770
XR_005638835.1 other upstream 1908421 19512356 ~ 19520218 (+) False ercc3
XR_005638872.1 other upstream 1930415 19498093 ~ 19498224 (+) True LOC120556586
XR_005638873.1 other upstream 1930766 19497738 ~ 19497873 (+) True LOC120556587
unassigned_transcript_140 other downstream 1114054 22547201 ~ 22547272 (+) True trnag-ucc_7
TU38801 other downstream 1331572 22764719 ~ 22881652 (+) False ankrd11
TU38802 other downstream 1434573 22867720 ~ 22881366 (+) False ankrd11
TU38851 other downstream 1558990 22992137 ~ 22992502 (+) False LOC120555548
TU38916 other downstream 1703585 23136732 ~ 23137027 (+) True G29292

Expression Profile