RNA id: TU38332


Basic Information

Item Value
RNA id TU38332
length 1976
lncRNA type sense_over
GC content 0.39
exon number 3
gene id tpp2
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 21525592 ~ 21562814 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttactTGTGAGCATATTTTGTGCACATGAACATTTTCTCCCTACAGAACTGAAATGATAGCCAACTAGAGAGGGTTAAGCatgaagtatttttttttttgtgtgttttcttcagaaacttttactttaaaggACCATGCCAGTgggttttgtatgtttttatcaGATTTACTGCAAATAGCGTTACATAACGGCTAACCATTTTGCATCCtatgttattttatattttttaatgggTTTGTTTAGGCATCTGTTTATTTTCAATATATTAGGTGACTTTTGAAACCCAATGGTGAACACCAAGTCTGCATTAAAAGCCCTTAAAACCAAATTTCTCAATCATCTTTTTACTCTGGGCGATGGGGGTTCCACATAAACACACCATTTTCTGGCAAAGTCAGAACAGTTTTCATTATGTCACAGGGGATTTCTGTTTGTGCCGTCTCACTGGGTCGAGGTGGTACGGCCATATTTCTGAgcaccaatcaggatttagCAATCAAAACGAGATGACAGTTTTGGggttGTCCTGATGAAGCAGGTTAGCTGAATTGTTGAATGTTAAAACTCGTAACAAATGTTGATGCTTAGCAATGCAGTGTAATTGCGCACACGTTTATTTGAAAATACTTCAATGCTTTTCTCTGCACATATAATccaatttttacaaaaatgaatGCAGACTTGATGTTCATTTTGAATTAAACAACTTGAAAGAGTACTCCACCAATTTAGTATTTCACTCCTGTAACATTGCAGCTTTCATAATGGACAGTTTAAAAAAGGAGCCCTGTGGAGCCATAAAAGGCTTTATACAACTTCTATTTCCAAATATCTAATCcaaatttatttataatgcACGTTTATAATGTAGCTAGTAGTTCCCCTTTTGAGCAAGTTTGAAAATCAACCATTTGTTTTGCATGTATGTAGAAATTAATGGGGAAACGATgactgtaaaatatttcttaatGGTCAGGTTTACATGATTTTTTTAGTCGAgctaaaacttcaaaaacactgGCACGGTCCGTTAAAATATCTCGCCTGAATCAAACGAGGACACAGCGGTTTGGTTTTCCAGTGCAAAAGAGGACCACGCTAAAGATACAAACTACGTAATCACGTTTTGTCTTTTACATTTGTGATTACCTGTCACAGTCCGTAGTATTATCAGTTGAACCATATCATGATTGTCCCACTTTAAAGGCAGAATGAGTAGGATTTGTCGGTTGCGATTTGTAAACAACATTTGAAGTTGGCCCCCGACTAAACGAGTGGAACGGTGCTCGCCAGCCGTGAATCAGTTGTCACAACCCGTGTTGACTCAGGGGTGAAGTGTTtctgtttttagctgtgacttgCGTGCGCTTTCTGCAGCGGTCAGCAGCACAGGCCTCTCCCGAGTGCGCAGGGCTTTACTGGAGTCACTTGGGTTCGACAGAGTTTGTCCTCATCGTCTTTTCTGCTTCTGTTTTCTCCTGCTgcttcatccttttttttttttttttttttctcctctttcctgTGTTTGGGGTTTGGTTCAGGCAAATGTTAGGTTCAGGGTTCAGTTGTCTACAGTACGCGTTGCCAATGACAGTCTCTCCAAAATGGCCTTAACTTTCACCACAGGACTGTACCGTCCATTTCTGGCACCAGACAGACTTCTCTATATCTGTTGCTCTCACTCTGCTGGTGTCAGGAAATACTTCAGAAATGCTTCTTCTGGATGTTGAGTGTTTATATTTGTAGTCATAAAATCTAGTAAATGCCAATATTTTACAGAATGTTATGAGATAAGGTTGTATGCTCTtagtattatattattttataccCATTCTTCCTCAATGATGTGGGAAAGACCCAAGCAACTGTCACGCTATTTTGTGGTCATGTGGAATTGTGTCACAAACAAGGAAAACCACACTGAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38282 lncRNA upstream 69052 21357332 ~ 21456540 (+) True G28812
TU38327 lncRNA upstream 92445 21428639 ~ 21433147 (+) True grk1a
XR_005638869.1 lncRNA upstream 112383 21409853 ~ 21413209 (+) False LOC120556583
TU38321 lncRNA upstream 112758 21409652 ~ 21412834 (+) False LOC120556583
TU38322 lncRNA upstream 112758 21411053 ~ 21412834 (+) True LOC120556583
TU38368 lncRNA downstream 38799 21601596 ~ 21603906 (+) False dcun1d2b
TU38369 lncRNA downstream 38799 21601596 ~ 21603651 (+) False dcun1d2b
TU38370 lncRNA downstream 38799 21601596 ~ 21603848 (+) False dcun1d2b
TU38371 lncRNA downstream 52919 21615716 ~ 21616158 (+) True G28875
TU38378 lncRNA downstream 73734 21636531 ~ 21638081 (+) True G28880
XM_039795537.1 mRNA upstream 72289 21434259 ~ 21453303 (+) True LOC120556135
XM_039796068.1 mRNA upstream 92445 21421110 ~ 21433147 (+) False grk1a
XM_039795981.1 mRNA upstream 135045 21381209 ~ 21390547 (+) True ercc5
XM_039795983.1 mRNA upstream 136798 21381209 ~ 21388794 (+) False ercc5
XM_039795984.1 mRNA upstream 151450 21372157 ~ 21374142 (+) True trmt10c
XM_039794550.1 mRNA downstream 33534 21596331 ~ 21603868 (+) False dcun1d2b
XM_039794549.1 mRNA downstream 34386 21597183 ~ 21603868 (+) True dcun1d2b
XM_039794551.1 mRNA downstream 34553 21597350 ~ 21603868 (+) False dcun1d2b
XM_039794552.1 mRNA downstream 34592 21597389 ~ 21603868 (+) False dcun1d2b
XM_039794554.1 mRNA downstream 34761 21597558 ~ 21603868 (+) False dcun1d2b
TU38307 other upstream 122142 21396213 ~ 21403450 (+) True G28826
TU38234 other upstream 764445 20711104 ~ 20761147 (+) True G28770
XR_005638835.1 other upstream 2005374 19512356 ~ 19520218 (+) False ercc3
XR_005638872.1 other upstream 2027368 19498093 ~ 19498224 (+) True LOC120556586
XR_005638873.1 other upstream 2027719 19497738 ~ 19497873 (+) True LOC120556587
unassigned_transcript_140 other downstream 984404 22547201 ~ 22547272 (+) True trnag-ucc_7
TU38801 other downstream 1201922 22764719 ~ 22881652 (+) False ankrd11
TU38802 other downstream 1304923 22867720 ~ 22881366 (+) False ankrd11
TU38851 other downstream 1429340 22992137 ~ 22992502 (+) False LOC120555548
TU38916 other downstream 1573935 23136732 ~ 23137027 (+) True G29292

Expression Profile