RNA id: TU38370


Basic Information

Item Value
RNA id TU38370
length 2253
lncRNA type sense_over
GC content 0.36
exon number 1
gene id dcun1d2b
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 21596331 ~ 21603906 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcgtgggGGGGTAAACATATTGCCTCTTTTACAATACAATGTTAATTGTAGCTCATTTGGTTTTATTATGATTACAAATTATGATCACTTTAACTGACAGTGAAAGAATTCAGATCCACATTTTGAATTCACACAATTAGAAAGAGAAGCATGCTTTTCAGGCTCAGCACCAGCAGAATCACATTTGTTACAGTTGTAAAATGCTATATCaataggaaaggaaaaaaataatagatTTAACTTTTAGAGGAGCAAAAATGTTTATCTGACAGGTTGACATGTATAATCATGAGTAATACATAAGAAGCATTTAGGATCCTCATTTCACAAAGAAACTGACACATTGACTGTTTCTTTTATGCAGGTGATATATCAACTTTGCAAACTGCACTGATTCACACTTTTTCTGTTGTAGGTTTTCTTTATCAGTTAGCACTGCATACAGCTACAGAGCTATTCAGTTTACTGTGGGTTCACTGACATAGACATTTTAATGTATGAACATCTACATCCCAGCTTAGATTTAACTGTTTGTTTACACTGTTTGAAGTTTTAGTCTGTTGCTTTTCATGATTTAGCGACTGTAGTGCAAGTACCGTAGAACTACCACACAGAAAAACAGGTCACTTTGAGAACAATGGTTGCGCTGCCATCTAGGGGTGCAATGCTTTTCCTCCATACAAGATTTAGTGTTGCTCTATAAGTGTAATTATAAACACTAAAAGCATCCCCCTTTCTCAGCTAAAGAGTTTGACAGAAGGTATAGCTGAGGTACCAGTCGTCCTCTCCCAGTCACAGTGAGCAGCAGGTGGCTTCCTGCACTTACATCAGTATTTGCCATCTAACTGTGCTATCTTGTTTTGCCAATTGTTGTCATAATGACAAAACCTTTGCCATGTGTTGAAATAAGGATGGATTATTTCCCCAGATGAAATTTCTCCTCCAACTACAGGGGaaatatttgcctttttttcctTAAGTTGACAAACTTCTGTTTAAGTTCTCATATTTATGTAAACCGAGGTCAGTCATAAACTATGGTAGTGTGCATAACGTAGATCAGTATGGGAATTTATTATTTCAGTCTTAGATTGAATGCAGATGAGTGGCAAAAAAACAGCTTAATCGTGACTGTAAAACAGTCACTGTAGCAGCAGGTAAATGTGCCATATTGTTCATCTTTGTAACCTGGCAAGTTGGATATGTGTTATTGGTGGAATTAAATATCCCATATAACTTTCTGACCGTCAAAGTCAGTGCACAAACCTATCACAGTCAAGACAGCGAGATGATGTGAAAACGTTTCCCAGTTGATTGTTGTTGACTTTATTATCTGACATGTGTGGTTCAGGAGCAAGAAAATGTGACATCTATCAGTATTCTGTTTGATAATGTGGTCCATTTGGTACGTTTTTATTTGTCAAATGTGTGGTCAACTCTTTTAAGTCATGCAGATTGTTCTTGTCAAAATAGTATTATTTTTGCCAGCAAGAAAAAAGGTACAGTGGCTTCAGAAAATTTTCAGACCCCTTCactttttacacatttcattAGATGGAATTTTAAATGGATACAATTTTTCCCCGACAATCTACACTCAATAGTCGTGGCATAGAACGTCTGTGGAGAGACCTGAAAATGGCAATTTCCCATCCAATCTGATGGAGCTGGAAAGGATCTGCCAGGAAGAATAGGATGAACTTCAGGAGTGCAAAGCTTGTAGAGACTTACCCAAGAAGACTCAAAGCTCAAATTGCTGCCAAAAGGGCAAAAGTACAAAGTACTGAATCAAGGTTCTGAAAACTTATTGAGAgatttcagtttttgttttttttaatacattttctcttTGTCGTAACAGAGTGTAGATTGATTGGCAAAAATGCCATTTTTATCcatttataacacacacacacaaaaaaaactaagcGTGCAAGAAGGGAAGGTCTGAATGCTTTCTGAAGCCATTTTATTTACAGAATATTATGTTTTGTCACAGAGGCATACCGTACATTGTTTTCTTAAGCAAGTTGTCAATAAAGCATGTTTTTAACAGACTTGTAAGAGATGTACCTCTGTCTACCAAGTACAGCAGTTAGTTCACAAATGGTTGTTTTGTTGTCCGAAATGAAGATATTGAATGCTGGTCAGCATGATTGTGTTGTGCTGAAATCAGTATCCCAATAGTAATATTTTTCTGAACTCAATATGAATTACAACATGTCAAATGTGCTAATGAAATATCGCAGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38332 lncRNA upstream 38799 21525592 ~ 21562797 (+) False tpp2
TU38327 lncRNA upstream 168449 21428639 ~ 21433147 (+) True grk1a
XR_005638869.1 lncRNA upstream 188387 21409853 ~ 21413209 (+) False LOC120556583
TU38321 lncRNA upstream 188762 21409652 ~ 21412834 (+) False LOC120556583
TU38371 lncRNA downstream 11868 21615716 ~ 21616158 (+) True G28875
TU38378 lncRNA downstream 32683 21636531 ~ 21638081 (+) True G28880
TU38500 lncRNA downstream 114640 21718488 ~ 21718824 (+) True G28976
TU38502 lncRNA downstream 262443 21866291 ~ 21868095 (+) False gpc5a
TU38517 lncRNA downstream 282741 21886589 ~ 21888808 (+) False G28990
XM_039794536.1 mRNA upstream 38782 21544498 ~ 21562814 (+) True tpp2
XM_039794537.1 mRNA upstream 42340 21544498 ~ 21559256 (+) False tpp2
XM_039795537.1 mRNA upstream 148293 21434259 ~ 21453303 (+) True LOC120556135
XM_039796068.1 mRNA upstream 168449 21421110 ~ 21433147 (+) False grk1a
XM_039795981.1 mRNA upstream 211049 21381209 ~ 21390547 (+) True ercc5
XM_039794538.1 mRNA downstream 1269 21605117 ~ 21613287 (+) True adprhl1
XM_039794539.1 mRNA downstream 1286 21605134 ~ 21609385 (+) False adprhl1
XM_039794545.1 mRNA downstream 10853 21614701 ~ 21626517 (+) True grtp1a
XM_039794334.1 mRNA downstream 46897 21650745 ~ 21667717 (+) True tgfbrap1
XM_039794333.1 mRNA downstream 46897 21650745 ~ 21667717 (+) False tgfbrap1
TU38307 other upstream 198146 21396213 ~ 21403450 (+) True G28826
TU38234 other upstream 840449 20711104 ~ 20761147 (+) True G28770
XR_005638835.1 other upstream 2081378 19512356 ~ 19520218 (+) False ercc3
XR_005638872.1 other upstream 2103372 19498093 ~ 19498224 (+) True LOC120556586
XR_005638873.1 other upstream 2103723 19497738 ~ 19497873 (+) True LOC120556587
unassigned_transcript_140 other downstream 943353 22547201 ~ 22547272 (+) True trnag-ucc_7
TU38801 other downstream 1160871 22764719 ~ 22881652 (+) False ankrd11
TU38802 other downstream 1263872 22867720 ~ 22881366 (+) False ankrd11
TU38851 other downstream 1388289 22992137 ~ 22992502 (+) False LOC120555548
TU38916 other downstream 1532884 23136732 ~ 23137027 (+) True G29292

Expression Profile