RNA id: XM_039794546.1


Basic Information

Item Value
RNA id XM_039794546.1
length 1707
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC120555658
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 21579968 ~ 21583558 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGGTAGCAAAAATGCCTCTCAAAGCTTTCACCGTAAGAGACACCTCTTCAATTCATCCAGATGTTGAAATTGGATTAACTGACCTAGAGAAGAAGCTCTGCAGGCACTTTAAGCGCATAGAGATCCAGGGAAAACGTCAAAGAAAGGTCCCTATCATCCTCACGCCAAATATGCTCTCATCCATGGAGGCTCTAGTTGAGAATCGCATACAATGTGGAGTTCCAAATGAAAACCACTTCCTGTTTGCAAGGCCTGAAGCACGAACACATCTTAGAGGATCAGATGCCATCCGACAACTTGCACGCAAGTGTGGGGCCAAGCATCCAGAGGCCCTGTCATCCACTAAATTGAGGAAACATGTGGCGACCATGTCAAAAGTCCTAAACTTGCGGGATAATGAAATGGATGACCTTGCCGACTTTCTTGGCCACGACATTAGAGTACACAGACAGTTCTACAGGCTTCCCGAGGGTACATTACAGCTCGCAAAGATCAGCAAAGTCCTTGTGGCCCTTGAGCGAGGACAAATCTCAGAGTTCAGAGGCAGGACCCTTGACGAGATCAGCATTGACCCAAATGAGGAAATGGCTGGGGACAGTAATCTATCTGAGAATGAGGAGTGTGAAATGACCCCGTTGCTTTTAACAGCCGGATCGAGGCGAAAAAGGAAGTGCACGACTGAAGTTGGATCTGACAGTGATTCACAGGAAACTACAGtgtgtccCGTGAGTAagactgcaacaaaaaaaagaccagATAACAAGAAGCCAGTGGGTGAAGACAAATCTCCAGGTGAATCCCAGATCACCAAAGGTTCATCAAAAATGGCGAGAAGGAAGTGGAGCACAGAGGAGGTCCAGGCTGTGGAGAGCAATCTCATGGACAACATCAACTCTGGCAGGGTTCCTGGCAAAGCCCAGTGTGAAGCATGTATCAAGGCATCTTCAGACGCGTTTATGGGAAGGAGCTGGCAGGCAGTTAAGTTCTATGTGAAGAACCGCATGGACTAATAAACtaatggaaatataaattgtaATCACTGAACATAATTCTTTTTTGCTATCTAGTTTTTCTACAATCCCACAAGTAGGTACAGCTCTAGCTTCAATTCAGTTCATATTTGagcatgtaaatatattttattaagatTGATTGTCACAGCCATGTCAACAGCTATTTTGCTTTCAAATTTAAGGTGTCTACATCCTCGGTTATTTCAttgagtgatgtcattttaatttttatccTAAAGAACATTGTTGTAGTGGTTGGAGAAatggaggtagagagagacacaggttgTAGAGAGAGACATGTATGCAGGGAGAGAGACATGTatgcagggagagagaaagacaccTGTCTTGAAGATACTAGATATGTTGGAGAGAGAGACGGGTATTTAGGAAATGAGAcaggtatgtagagagagaggcaggtatgtagggatagagagagacaggtatgtaggaaatgagagacaggtatgtagggatagagagagacaggtatgtagggatagagagagacaggtatgtagagagagacaggtatgtagggATAGTGAGTGACAGGTAtgtagggagagagaggcaggtatgtagggagagagaggcaggtatgtagggagagagaggcaggtatttagagagagacaggtatgtagagagagacaggtatgtagggATAGTGAGGCAGGTATGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38267 lncRNA downstream 333655 21246351 ~ 21246566 (-) True G28799
TU38265 lncRNA downstream 358776 21221136 ~ 21221445 (-) True G28797
TU38264 lncRNA downstream 441844 21138049 ~ 21138377 (-) True G28796
TU38261 lncRNA downstream 506317 21073550 ~ 21073904 (-) True G28793
TU38247 lncRNA downstream 703935 20876032 ~ 20876286 (-) True G28782
TU38544 lncRNA upstream 303030 21886588 ~ 21889432 (-) False gpc6a
TU38556 lncRNA upstream 560695 22144253 ~ 22144464 (-) True G29022
TU38557 lncRNA upstream 578068 22161626 ~ 22162235 (-) True G29023
TU38640 lncRNA upstream 693664 22277222 ~ 22280362 (-) False LOC120555944
TU38661 lncRNA upstream 784573 22368131 ~ 22368562 (-) True G29090
XM_039794558.1 mRNA downstream 4009 21569674 ~ 21576212 (-) False mettl21e
XM_039794559.1 mRNA downstream 4010 21569249 ~ 21576211 (-) True mettl21e
XM_039794555.1 mRNA downstream 11808 21562932 ~ 21568413 (-) True LOC120555660
XM_039794556.1 mRNA downstream 13624 21562930 ~ 21566597 (-) False LOC120555660
XM_039794540.1 mRNA downstream 46651 21484682 ~ 21533570 (-) True rasa3
XM_039794544.1 mRNA upstream 43191 21626749 ~ 21634370 (-) True lamp1a
XM_039794331.1 mRNA upstream 51996 21635554 ~ 21648962 (-) True cul4a
XM_039795432.1 mRNA upstream 98313 21681871 ~ 21687213 (-) True LOC120556066
XM_039795002.1 mRNA upstream 303036 21886594 ~ 22051625 (-) False gpc6a
XM_039795001.1 mRNA upstream 303036 21886594 ~ 22051625 (-) True gpc6a
TU37839 other downstream 2453845 19123566 ~ 19126376 (-) True LOC120555836
TU37840 other downstream 2453845 19123566 ~ 19126376 (-) False LOC120555836
TU37831 other downstream 2518071 19059755 ~ 19062150 (-) False LOC120555695
TU37697 other downstream 2860202 18719372 ~ 18720019 (-) True G28345
TU37603 other downstream 3159722 18417978 ~ 18420499 (-) True G28269
TU38813 other upstream 1294073 22877631 ~ 22889042 (-) True G29209
TU38861 other upstream 1332296 22915854 ~ 22919554 (-) False dpep1
TU38988 other upstream 1715984 23299542 ~ 23310746 (-) False spi1b
TU39182 other upstream 2329797 23913355 ~ 23958933 (-) False apba2b
TU39183 other upstream 2329797 23913355 ~ 23958984 (-) False apba2b

Expression Profile