RNA id: XM_039794999.1


Basic Information

Item Value
RNA id XM_039794999.1
length 1918
RNA type mRNA
GC content 0.54
exon number 9
gene id gpc5a
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 21720034 ~ 21872025 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCTGTACAGCCAGCCAGCCGCTGAATGCAGGTAACGTTACGGTACCGCCTCTGCTGTCGGTCCGGCGAACTTGGACAACATGCCGCTTTCAAACAGACTCGTCACTCCGCTGCAACTTTCTCTTGGCGTGTCTGGACTGAAATGATCATCTGGAGCGTTTCatcgacacaaacacaaacaccgcACGGTCGACGCTCAACCCTGAAAGCTGAGATGTGGCCGGGACTCACCTGAGCGGACTAAATAGAAGAGACCTTAACTTaacaagcttcttttttttgtgtgtgtgtgtggattttattaaaatgggTGAGCTGTGGACGAACTACGTTTTCTTCATGGCGTGTTGCTCTGGATTAGGGTTTGGAAGCCCAAACAGATGCGACGAAGTGCGGAAAGTTTTCCAACTCAGACAAATTGGACCAAATCAATTATTGCCGTTAAGCCCCAGACCAGGTTCAGACCTTCAGGTGTGCGTGACCAAGAACCTGACCTGCTGCACCAAAAAGATGGAGGAGAAGTACCAGGTGGCGGCCCGGAGAGACATCCAGAACCTCGTCCAGACGTCCAGCTCCAGCCTCAAGTTCCTCATCTCGCGCAACGTCGCTGCTTTTCAAGAGACCTTTGAGGTCCTGATGAGGCAGGCGGAGAATCGCACGAATGCAGTCTTCCAGGAGTCTTACCGCAACATGGCTGATCAGGCCGTGGGCCCTGTGCGGGAACTCTTTACAGATATTAGTCTCTTCCTGCTGGGGTCTGAGCTCAACATTGATGACTTAGTGCAACGATTCTTTGACGCTCTCTTCCCGCTGGTCTACAATCACCTCATCAACCCAGGCCTCAGCAACCTATCACCAGGCTACGCTGAGTGTGTAAGGTCGTCCAGCCGGGATGTAAGACCGTTTGGTGGGGCGCCCAGCCTCCTGGCTGATCAGATTGCTCGCTCTGGGGTCTCCGGGAAGCTTCTCCTTCAGGCACTGCACCTCGGCATCGAGGTCATCAATACCACAGACCACTTACAGCTGAGCCGCGAGTGCAGACGGGCCCTGCTTAAGATGCACTACTGTCCTCACTGCCAGGGCTTAACCCAGTCCAAACCCTGCATGGGTTACTGCCTCAACGTGATGCGAGGCTGCTTGGCAAGCATGGCGGAGATCGACACCCACTGGAGGGAGTTTGTTCGCTCGCTGGAGGGCCTGTCAGCACGGATGCACGGACCTCAGGATTTGGAGCAAGTGCTTCTGGGAGTTCACACACTGCTTCACGATGCTGTCGGACATGCTCAGAAAAATGGCCCCCGCCTCTCAGCACAGGTGCACAAACTGTGTGGCCCACCAAGCAGGAAGCCTGCGCAGTCAGTCCGCATCCAgcacagcagcaacagcagagaatCCATCCCTCTTAATGCTCTTGTCAGAGTGTCAGGGGACTCGCTCGCTGTCAGGAGGAGGGACTTTCTGAACAGTCTACGTCTCTACCGTACGCTCTACGGCGGCCTGGCGGATcagctgtgtgtgagtgagctgGCCTCTGGTGACGGGCTGTCCTGCTGGAATGGAACCTACATCgtaaaaagCTACACTCTCCGTGTGGTCGGCAACGGGATCAAGGCTCAGAGTGCCAACCCTGAAGTGAAAGTGAAGGGAGCAGACCCTGTAATAAATCAGATCATTGACAAACTGAAACACATCAATCAGCTGTTACAAGGAAAGTCCATTCCTAAACTGGGGTCACTGGACCAgattgaaacaggaagtggagaCGCAGAGGGACGTTACAGCGGCGAATGTGACGATGAAGACGGCTGTGGTGGTTCAGGTGGTGGAGAGGTGAGGAGGAAAGTCTCCAGAGTCTCCAAATacagaaagagaacggTGTCAACGAGCACCAAACCGAGCCACCCTGATGCCCCATAG

Function

GO:

id name namespace
GO:0031225 anchored component of membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043395 heparan sulfate proteoglycan binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38500 lncRNA upstream 1211 21718488 ~ 21718824 (+) True G28976
TU38378 lncRNA upstream 81954 21636531 ~ 21638081 (+) True G28880
TU38371 lncRNA upstream 103877 21615716 ~ 21616158 (+) True G28875
TU38370 lncRNA upstream 116187 21601596 ~ 21603848 (+) False dcun1d2b
TU38369 lncRNA upstream 116384 21601596 ~ 21603651 (+) False dcun1d2b
TU38517 lncRNA downstream 14564 21886589 ~ 21888808 (+) False G28990
TU38519 lncRNA downstream 14657 21886682 ~ 21889549 (+) True G28990
TU38533 lncRNA downstream 211920 22083945 ~ 22084401 (+) True G29004
TU38534 lncRNA downstream 256939 22128964 ~ 22129578 (+) True G29005
XR_005638821.1 lncRNA downstream 287545 22159570 ~ 22160895 (+) True LOC120556188
XM_039794088.1 mRNA upstream 10654 21699803 ~ 21709381 (+) False LOC120555410
XM_039794087.1 mRNA upstream 10654 21699804 ~ 21709381 (+) True LOC120555410
XM_039795433.1 mRNA upstream 38270 21674424 ~ 21681765 (+) True LOC120556067
XM_039795434.1 mRNA upstream 45736 21668518 ~ 21674299 (+) True mrpl16
XM_039794336.1 mRNA upstream 52318 21650745 ~ 21667717 (+) False tgfbrap1
XM_039795004.1 mRNA downstream 39381 21911406 ~ 21921876 (+) True LOC120555860
XM_039795358.1 mRNA downstream 317871 22189896 ~ 22227106 (+) False lmo7b
XM_039795356.1 mRNA downstream 317871 22189896 ~ 22227106 (+) False lmo7b
XM_039795354.1 mRNA downstream 317871 22189896 ~ 22227105 (+) True lmo7b
XM_039795360.1 mRNA downstream 317871 22189896 ~ 22227105 (+) False lmo7b
TU38307 other upstream 316585 21396213 ~ 21403450 (+) True G28826
TU38234 other upstream 958888 20711104 ~ 20761147 (+) True G28770
XR_005638835.1 other upstream 2199817 19512356 ~ 19520218 (+) False ercc3
XR_005638872.1 other upstream 2221811 19498093 ~ 19498224 (+) True LOC120556586
XR_005638873.1 other upstream 2222162 19497738 ~ 19497873 (+) True LOC120556587
unassigned_transcript_140 other downstream 675176 22547201 ~ 22547272 (+) True trnag-ucc_7
TU38801 other downstream 892694 22764719 ~ 22881652 (+) False ankrd11
TU38802 other downstream 995695 22867720 ~ 22881366 (+) False ankrd11
TU38851 other downstream 1120112 22992137 ~ 22992502 (+) False LOC120555548
TU38916 other downstream 1264707 23136732 ~ 23137027 (+) True G29292

Expression Profile