RNA id: TU38519


Basic Information

Item Value
RNA id TU38519
length 2868
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G28990
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 21886589 ~ 21889549 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAAAAATGGTAAGGCATGTCTGCTTGTACAACCCTCAACTTCAGTTCCCCCAAAACACTTCAAACAGCGTGCACTGACAGCTCCAAAAATCTTAATGTGCTCCTTAGTTATCTGATTTTGCAAATCACAACAGTACCACACTCACAGCATATGTTTTAGCAAAAGTGCAGCAAACAATTAACATCAAAATGGAGAAGACCTTGCATAACACATTTTCTAAACATTCTGTAAAAAACCtaattttttcagtttttcaaatgCCAAAGAGAATAAATGagaccaaaaaagaaaagaaaaggatcACAGACAAATTAAGCGAAGCACTGAAGCATCTCAGACAGTGATACTGTCTGACCAGGGTAACGTAGCTTGTCAGGAGAGAGAGGAATACACAAGGCAGTGgaaaatgacaaacaacaaCTCATCAGAATGAGAGAAGACTGTTAGTACCGATGCAAGATCTTTGGAAAAATTCAGCCTACTTCTGAAACACCTTCACCTTGATTTACTTTCTTTACTGTATTTCAGGAACACGACCCGAAGACCTGCCTCATCCTAACTCATAAAAAACCTCTTGTTGTTGCAATCACAGATACAGGTGCATTCAACCTTTGTGTGGCTGCAGATTCTTGCTGAGTTTTCACACTTTCAAAAACATAGTCTTCATAAGTTCATGGCTCACTTCTGACCCTGACTCAGAAATATCTGCCTCCACAATGTTATTTAATACTTGAAAAGTGAATCTATATGGCTGTGTTTGACTGCAGCGATATATAACCCACTAACTTGCATTTTTACTGTATAGTTATTTAATCAATTGTAAAATCACCAAAGGACAAAGATCATCTGAATGCAACTCTGTTACTGCCTGATTTAATCTAGTTTTAGGCAACAATATGACACATCAAAATAAAAGTGCTGACAAAACATCTTTTTGTGTTCAATTCTAAAAATCAAGTGAAGATGCCTGAAGCTGAAATTGAATTATCAGTCTGAGCTTCAATGGCCCAATTTAACAGAACATGATTTTTACATGGAAGTTCCTTCATTGAAATTATCTGCTTTCCAGACTGCACTCCTGGGTGGGTAAATCCTGTTGCTGCACATCAGGTCTGGCAGAGAGTTCCTTCATTTAATATTCAGCACATTATAAATAGTTACTGCTGGATGTCCATCCTGTCTAACTACCTCTCATCTGTCAGCCCCACTAAGTTGAGATGGGGATCTGTCTGCTTTCACCTCTGCCTAACAAAGGTGGGTGGTGGGATTTCTTTGCTCATGTAAATATGATCCGGCAGAGGAGACGTGAGATATCCAAAATATCCAACACAGAAGTGTGGTAGAGTGTAACCAATGTCACTTTTGCGTAAACACTatttcagattttgagaggttGGTAAACtgtgtttactgtatgtgtgtttagttTCCATTGCACCCCTGCTTCTGTCTCATACAGACTTTGACCTTTTAAGGGCTTAACAGGCTCTCTCAGTCAGCCCAGACTAAACACTTTTTTAGTGCAATATTTCAcgtttttaatttttgtcttttctgtatttccactcaGGTTATTTAATGCACAATACAAACATTATAGAGGACCTTATGTTGATCAGTTTAGTGTTGTCTTTCCTCAGGCTTTGGTTGGATAGAGGCATGTCGCCTTTCACAATTAAGGTTTACGCACTAGTGATTTAATTGTGTCATGCTGGTTTTAGTGGGAGGCTGCTGTTTAGTCACCTTCTCCTGAAGCAGTTTTTGCAGGGAGTGAGGCGTCAAAGGTCAAATGTTTTCCCATCTGTTCTGCAGTGGAAGCTTCCTGTGGTGATTGGGGTCTCTTGTGTGAGTCATATGAGCCCACTGAGGGGAGATCTTGCTTAAGTTGCTGTCTGTGAAGACAACCATGTTGCTGCAAACTTTGGCGAATGTGGAGATCAGTCTACTTTTGTCATTTGCTCCTTTGAGGGGACCACAGAAACACTGCATTTCATCCACACCTGTAATTTGTGCCTAGGACATCATATATTTTTTGCAGGTCTTGACAGTTGCAGCTTGATGCTATTTGCACTCTTGTGTCCCATGATGCTCACAGTAGCTGTTAATTTGTCACAGCGATGGGTTTAGGGAATGCCCCTGTTGAGTCAAGAGACTTACTTATTGGCTATGTAAAAGCATTTCAGGTGCTTCTGAGTTGATGGGATTAGATCCTCCAGGGACAATCCAGGACGAGGGTGGCTGCCACAAGTGCCCTCTTTTGTGGATCAGTGTACATTTAtccctttgtttgtttgtttatatgtaCGCCTGCAACATTTCTGGAATGTCCTTTTTCTGTGTGAGCAGAGGTCACGGGCATCGAGTTGTTTTGGTGGAGTGCAAACTATTGGCTTTGCTCCCTACAGAGCCTGTTAGAGGTCAAAGACTGTTGGGAGAAAGAATTAAAGTTATGAATAGTAACCCTAGTTCTAAGAGTACAGCCAGAGCCCACTAACCTTGgcaccctgtttttttttagtttctgACTTTGTACATGTCTTTTAGGAAAGCATGGGCACTTGTATAACCTTTAACCTGTAGGGGTGGTGGGTCCGGCATGATTGCCAAACAAGAACACGCAAATTTCAGCATAGTGCTCCATAAGATGTGAAAGGGTGAACCTGTCAGCGGGCTGAGCTTACAGGTGTAGGATAATGTGTAACCTTCCATACATGTAATACAAACAAGTAATACAAACGTTCAACATAAATCATAAATAATTAAAGCATGAGAGTGaagaaaatacataaaaatgtcattaacaTATACCTAATATCACTAATATACTCTGAGTCCTCtgagaaataaaaaggaaatctgAACTGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38502 lncRNA upstream 18587 21866291 ~ 21868095 (+) False gpc5a
TU38500 lncRNA upstream 167858 21718488 ~ 21718824 (+) True G28976
TU38378 lncRNA upstream 248601 21636531 ~ 21638081 (+) True G28880
TU38371 lncRNA upstream 270524 21615716 ~ 21616158 (+) True G28875
TU38370 lncRNA upstream 282834 21601596 ~ 21603848 (+) False dcun1d2b
TU38533 lncRNA downstream 194396 22083945 ~ 22084401 (+) True G29004
TU38534 lncRNA downstream 239415 22128964 ~ 22129578 (+) True G29005
XR_005638821.1 lncRNA downstream 270021 22159570 ~ 22160895 (+) True LOC120556188
XR_005638822.1 lncRNA downstream 270021 22159570 ~ 22160895 (+) False LOC120556188
TU38655 lncRNA downstream 478580 22368129 ~ 22368503 (+) True G29085
XM_039794999.1 mRNA upstream 14657 21720035 ~ 21872025 (+) False gpc5a
XM_039794998.1 mRNA upstream 18496 21720035 ~ 21868186 (+) True gpc5a
XM_039795000.1 mRNA upstream 116230 21720034 ~ 21770452 (+) False gpc5a
XM_039794088.1 mRNA upstream 177301 21699803 ~ 21709381 (+) False LOC120555410
XM_039794087.1 mRNA upstream 177301 21699804 ~ 21709381 (+) True LOC120555410
XM_039795004.1 mRNA downstream 21857 21911406 ~ 21921876 (+) True LOC120555860
XM_039795358.1 mRNA downstream 300347 22189896 ~ 22227106 (+) False lmo7b
XM_039795356.1 mRNA downstream 300347 22189896 ~ 22227106 (+) False lmo7b
XM_039795354.1 mRNA downstream 300347 22189896 ~ 22227105 (+) True lmo7b
XM_039795360.1 mRNA downstream 300347 22189896 ~ 22227105 (+) False lmo7b
TU38307 other upstream 483232 21396213 ~ 21403450 (+) True G28826
TU38234 other upstream 1125535 20711104 ~ 20761147 (+) True G28770
XR_005638835.1 other upstream 2366464 19512356 ~ 19520218 (+) False ercc3
XR_005638872.1 other upstream 2388458 19498093 ~ 19498224 (+) True LOC120556586
XR_005638873.1 other upstream 2388809 19497738 ~ 19497873 (+) True LOC120556587
unassigned_transcript_140 other downstream 657652 22547201 ~ 22547272 (+) True trnag-ucc_7
TU38801 other downstream 875170 22764719 ~ 22881652 (+) False ankrd11
TU38802 other downstream 978171 22867720 ~ 22881366 (+) False ankrd11
TU38851 other downstream 1102588 22992137 ~ 22992502 (+) False LOC120555548
TU38916 other downstream 1247183 23136732 ~ 23137027 (+) True G29292

Expression Profile