RNA id: TU38801


Basic Information

Item Value
RNA id TU38801
length 1319
RNA type TUCP
GC content 0.50
exon number 8
gene id ankrd11
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 22764719 ~ 22895007 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGAAAACCGCTCGAATGGGTTGGCGGAGAGGATTAAACCGAAACAAAATATGATCTTTTGATGGTTTATGTTGAACCAAGCAAGCCTACCGTTGCACAAATGGAGTGTTAAATGTTCGTAGTTTGCGGTGACGATGCAATAGCTGCGCTGTAAACGAGTTTTCGTGgatattttagtctttttttctttggacGTCTGTTTGTTGGTCTACATGGTTTTAACAAGCTAGCGCTAGCCTCGATTCTAGAGTGAGCTGCTTTCGAGCTGCGATGGTCGTCGCGAGTTTATGCGGATGTCTCCGGGCCCGTCTATACTGAACCAACGGCAACAAATGGGACCATCCAGCATCGGCCGAAAACATCGCGGCATAGACTAAACATTAAAGATTAAATACGTATTTGAATTTGTGGAAATTCAGACAGAGGATTCTGTGGATCAGACGGCAGGTGTTTTTCTAGTTGGATTTTAGCCCACTGACATTCTCCCACAGCCATGGAATCGACGGTTGATGACGATGCAATGGCAGCGTGAATGAAGCTTGGCGTGGGGAGAGCTGAACGATGCCCAAAGGTGGGGGTTCTAAAACCCCCCAGCTGGACCACTTCCCACTCAACACTGACATGGTGGAAAAGCAGGGTGGGAAGAAAGATAAAGTGTTGTCTAACAAGACTCCCAAATTGGATCGCAGTGATGGGGTCAAGGAGATGAAAGAAAAGGCCCCTAAAAGGAAGCTGCCTTTCACTGCTGGAGCTAATGGAGACCAGAAAGATTCTGACTCAGAGAAACCAGGTCCAGAGCGGAAGCGCATTAAAAAGGAGCCCACCAACACCCGGAAGGCGGGCTTGCCATTTGGAATGGGGATGCCAGGGATCCGGGCCGGGTACCCCCTCTCTGAGCGGCAGCAGGTGGCCTTGCTCATGCAAATGACAGCTGAGGAGTCCGTCAACAGTCCAGACACAACACCAAAGCATCAGTCACAGTCCAGTATGGGTCAGAAGGGAACGCCAAACTCTGCATCTAAAACCAAAGACAAAGTGAATAAACggaatgagagaggagagactcGGCTGCACAGAGCAGCAATACGTGGAGAGGTACGCCGCATCAAGGAGCTCATCAGCGAGGGAGCTGATGTGAATGTAAAAGACTTTGCAGGCTGGACTGCATTGCATGAGGCGTGCAACAGGGGATATTATGATGTGGCCAAGCAGCTGCTGGCAGCCGGAGCAGAGGTCAACACCAAGGGTCTGGATGATGACACCCCTCTACACGATGCATCCAACAATGGACATttcaagGTGGTTAAGCTACTTTTACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38774 lncRNA upstream 11074 22752468 ~ 22753645 (+) True G29176
TU38717 lncRNA upstream 163160 22548700 ~ 22601559 (+) False G29139
TU38716 lncRNA upstream 184472 22548700 ~ 22580247 (+) True G29139
TU38711 lncRNA upstream 229851 22533942 ~ 22534868 (+) True G29135
TU38672 lncRNA upstream 356480 22407966 ~ 22408239 (+) True G29101
TU38852 lncRNA downstream 116050 22997702 ~ 23001049 (+) True G29241
TU38854 lncRNA downstream 123226 23004878 ~ 23007982 (+) True G29243
TU38836 lncRNA downstream 134380 23016032 ~ 23019378 (+) True G29228
TU38839 lncRNA downstream 134380 23016032 ~ 23019378 (+) False G29228
TU38881 lncRNA downstream 139777 23021429 ~ 23024754 (+) True G29262
XM_039795992.1 mRNA upstream 12778 22713300 ~ 22751941 (+) False cdh15
XM_039795990.1 mRNA upstream 12778 22733310 ~ 22751941 (+) True cdh15
XM_039795601.1 mRNA upstream 52785 22669904 ~ 22711934 (+) True acsf3
XM_039795604.1 mRNA upstream 66451 22669904 ~ 22698268 (+) False acsf3
XM_039794238.1 mRNA upstream 221723 22539280 ~ 22542996 (+) True trappc2l
XM_039794973.1 mRNA downstream 14690 22896342 ~ 22911278 (+) True slc22a31
XM_039794976.1 mRNA downstream 42172 22923824 ~ 22929666 (+) True sult5a1
XM_039794975.1 mRNA downstream 42172 22923824 ~ 22926475 (+) False sult5a1
XM_039794977.1 mRNA downstream 63392 22945044 ~ 22960403 (+) True LOC120555841
XM_039794978.1 mRNA downstream 63392 22945044 ~ 22960403 (+) False LOC120555841
unassigned_transcript_140 other upstream 217447 22547201 ~ 22547272 (+) True trnag-ucc_7
TU38307 other upstream 1361269 21396213 ~ 21403450 (+) True G28826
TU38234 other upstream 2003572 20711104 ~ 20761147 (+) True G28770
XR_005638835.1 other upstream 3244501 19512356 ~ 19520218 (+) False ercc3
XR_005638872.1 other upstream 3266495 19498093 ~ 19498224 (+) True LOC120556586
TU38851 other downstream 110485 22992137 ~ 22992502 (+) False LOC120555548
TU38916 other downstream 255080 23136732 ~ 23137027 (+) True G29292
TU39086 other downstream 845360 23727012 ~ 23731706 (+) True G29433
XR_005638781.1 other downstream 1354072 24235724 ~ 24309279 (+) False plekha7b
TU39283 other downstream 1569660 24451312 ~ 24454877 (+) False sox6

Expression Profile