RNA id: TU38851


Basic Information

Item Value
RNA id TU38851
length 244
RNA type TUCP
GC content 0.52
exon number 2
gene id LOC120555548
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 22981783 ~ 22994164 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGTCTTCAGTAGCCACTTGGCCTACTGCCCGCCTCccttaaagaagaagaagaagaagaaggcgaGCTGCTGGCTGCCCTGGTGGTGTGTGTTCCTGGGCTGGTTCCTGTTGCTGTCCATCAGTGGATTATCCACTTACTTCACTCTGGTGTATGGCTTGTACTACGGCAAAGAAAAGTCAATCAAGTGGGTCATGTCTCTGGGCCTCTCCCTGTTCCAGAGCATCTTTGTACTGCAGCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38774 lncRNA upstream 238492 22752468 ~ 22753645 (+) True G29176
TU38717 lncRNA upstream 390578 22548700 ~ 22601559 (+) False G29139
TU38716 lncRNA upstream 411890 22548700 ~ 22580247 (+) True G29139
TU38711 lncRNA upstream 457269 22533942 ~ 22534868 (+) True G29135
TU38672 lncRNA upstream 583898 22407966 ~ 22408239 (+) True G29101
TU38852 lncRNA downstream 5200 22997702 ~ 23001049 (+) True G29241
TU38854 lncRNA downstream 12376 23004878 ~ 23007982 (+) True G29243
TU38836 lncRNA downstream 23530 23016032 ~ 23019378 (+) True G29228
TU38839 lncRNA downstream 23530 23016032 ~ 23019378 (+) False G29228
TU38881 lncRNA downstream 28927 23021429 ~ 23024754 (+) True G29262
XM_039794977.1 mRNA upstream 31734 22945044 ~ 22960403 (+) True LOC120555841
XM_039794978.1 mRNA upstream 31734 22945044 ~ 22960403 (+) False LOC120555841
XM_039794979.1 mRNA upstream 31734 22945181 ~ 22960403 (+) False LOC120555841
XM_039794976.1 mRNA upstream 62471 22923824 ~ 22929666 (+) True sult5a1
XM_039794975.1 mRNA upstream 65662 22923824 ~ 22926475 (+) False sult5a1
XM_039795689.1 mRNA downstream 20097 23012599 ~ 23014909 (+) True mcee
XM_039795690.1 mRNA downstream 20097 23012599 ~ 23014909 (+) False mcee
XM_039795190.1 mRNA downstream 112719 23105221 ~ 23156550 (+) False mettl15
XM_039795192.1 mRNA downstream 112746 23105248 ~ 23158790 (+) False mettl15
XM_039795191.1 mRNA downstream 114623 23107125 ~ 23158790 (+) True mettl15
TU38801 other upstream 110485 22764719 ~ 22881652 (+) False ankrd11
TU38802 other upstream 110771 22867720 ~ 22881366 (+) False ankrd11
unassigned_transcript_140 other upstream 444865 22547201 ~ 22547272 (+) True trnag-ucc_7
TU38307 other upstream 1588687 21396213 ~ 21403450 (+) True G28826
TU38234 other upstream 2230990 20711104 ~ 20761147 (+) True G28770
TU38916 other downstream 144230 23136732 ~ 23137027 (+) True G29292
TU39086 other downstream 734510 23727012 ~ 23731706 (+) True G29433
XR_005638781.1 other downstream 1243222 24235724 ~ 24309279 (+) False plekha7b
TU39283 other downstream 1458810 24451312 ~ 24454877 (+) False sox6
TU39277 other downstream 1458872 24451374 ~ 24454877 (+) False sox6

Expression Profile