RNA id: TU38893


Basic Information

Item Value
RNA id TU38893
length 311
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G29271
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 23045293 ~ 23089580 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTGCCCAGTCGTAAAACAGACCATTCAACACCAGGACAGTAGTGTCATCTGGGAAGTTTTGGACAACTCCCTGAGTAATTTACTTAAGCGATATTTTCCTCTCTGTACCGACAAGCTTCAGGATATCTATTCAGCTTTGGAGCAAATAGATTAAATTATTGATGGTGGAAATTGCATGGATGAGGTAATGCACTCCCATGGCTGCACGGCTCCTTTGGAGATCGTTTGAAACTGAAGTTGTCGCATGCTGaaacgcagcagcagcagcagcggcggcggcggcggcggcggcagcagtagcagcagcagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38881 lncRNA upstream 20539 23021429 ~ 23024754 (+) True G29262
TU38836 lncRNA upstream 25915 23016032 ~ 23019378 (+) True G29228
TU38839 lncRNA upstream 25915 23016032 ~ 23019378 (+) False G29228
TU38854 lncRNA upstream 37311 23004878 ~ 23007982 (+) True G29243
TU38852 lncRNA upstream 44244 22997702 ~ 23001049 (+) True G29241
TU38912 lncRNA downstream 70371 23159951 ~ 23160396 (+) True G29288
TU38918 lncRNA downstream 71013 23160593 ~ 23160917 (+) True G29294
TU38953 lncRNA downstream 197317 23286897 ~ 23294407 (+) True G29323
TU38969 lncRNA downstream 279600 23369180 ~ 23374096 (+) True LOC120555420
XR_005638711.1 lncRNA downstream 279762 23369342 ~ 23371897 (+) False LOC120555420
XM_039795689.1 mRNA upstream 30384 23012599 ~ 23014909 (+) True mcee
XM_039795690.1 mRNA upstream 30384 23012599 ~ 23014909 (+) False mcee
XM_039794295.1 mRNA upstream 51129 22981783 ~ 22994164 (+) True LOC120555548
XM_039794978.1 mRNA upstream 84890 22945044 ~ 22960403 (+) False LOC120555841
XM_039795190.1 mRNA downstream 15641 23105221 ~ 23156550 (+) False mettl15
XM_039795192.1 mRNA downstream 15668 23105248 ~ 23158790 (+) False mettl15
XM_039795191.1 mRNA downstream 17545 23107125 ~ 23158790 (+) True mettl15
XM_039794303.1 mRNA downstream 129609 23219189 ~ 23254585 (+) False lgr4
XM_039794304.1 mRNA downstream 139328 23228908 ~ 23254585 (+) True lgr4
TU38851 other upstream 52791 22992137 ~ 22992502 (+) False LOC120555548
TU38801 other upstream 163641 22764719 ~ 22881652 (+) False ankrd11
TU38802 other upstream 163927 22867720 ~ 22881366 (+) False ankrd11
unassigned_transcript_140 other upstream 498021 22547201 ~ 22547272 (+) True trnag-ucc_7
TU38307 other upstream 1641843 21396213 ~ 21403450 (+) True G28826
TU38916 other downstream 47152 23136732 ~ 23137027 (+) True G29292
TU39086 other downstream 637432 23727012 ~ 23731706 (+) True G29433
XR_005638781.1 other downstream 1146144 24235724 ~ 24309279 (+) False plekha7b
TU39283 other downstream 1361732 24451312 ~ 24454877 (+) False sox6
TU39277 other downstream 1361794 24451374 ~ 24454877 (+) False sox6

Expression Profile