RNA id: TU38969


Basic Information

Item Value
RNA id TU38969
length 3061
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC120555420
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 23369180 ~ 23374096 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGTGTTGAGCCAGAAGGCCAGGTCTTCTTTCATAGGCAGCAGGCTGGCATCATGGCGATAAGGCAGCCACTGGTTGTACTCCTGAGGACTGGCGAGGCCAGGCCCAGAATGTCTGTACTTTTGGCCAAGAAGACAGTTCATCCCCAACCCGGTCAGGAGCCTCGGGCTCAGAGGACCGTCAAGGCTGGTGTTCATCGCTTCCACTTCACTGTCCATGCTTCAGAATCGTCAAGTAGAGGCACACCTGGAGGGCAGATGTTTGGGACCCAAAGGCAGCATCACAGCTGGCTTTTTGAGCTCATTTAGTTCTACACCACCTGTGTTTTTGCATTGAACTACCTGTAGCTCACTGTTGCTGATCCTTATTACAAGTTCAAATGTAGTTTGTTGTAAAGTTGCCTTACAGTATATCAGCACAAAGCAGATGACAAATCCCTCGCACATGATCACAGAGGAAGTAGGGCAAAGACGTACAGGCAGTAATGTACGTCAGTGAATTCTGAGCTCAGCTTGTGTGAGATAAATGTGAGGATGTTGTAGACACGCGGTTCTGACTGGACATAGTGAAAAGAGTCTTTTGTAAACACATCATGCAGACGTGGGACAGAGACAATGTATAATGTAGAGGGGGGCTGCCTGCCAAGTTTGAGGCTGGTTTACAGGTTGACCAGCAGGGCATGAGAGCGTCTGTCTCTAACAAAACATCCAGGTGCAATATTCACACCTCAGTTACAGGATGGCTCTGTGGGGAAGGGAAGGCAAAGGTCAGCTACTGGCCTAGCTCTCAGACACTAGCAGCCTTTATACTCCTGTAGAGCTGAGGGTCTAtgtctgtaaacacacacacacacacacacgcacgcacgcacacacggacacacacacacacacacacacacacacacacacacacacacacacaggcccatGCATGTATCAGTGTTTCTATTCCACCTCATTTACTTTACACAACCTTTAAGTAAGATTTGCTTCAGTGGTATTTCACAGCCTTTAATTGTGTTTTCATAATAAGAGCAAACATCTTTACAGTCAAAGCGGCCGTTAGACACTGGGGCCTTCGGAGAATGAAACCAAAGCAGATGTCTGGTAAACAACTAACTTCACAACTAGATTACACAATTCTGTTTCCTTACATGACAGGCACCACTCTCATGTTTACTTTGGAAAGAAAATAGCAAATCTGTCACTGAAAGAATCCTCTCTTCAGTCAGGAACATGTGTCGCTGTCTCTACAAAGTAATTTCAGTAAAAATGTTGTTACTGTATCACCTGCAGGCTTATGCATTCTGCTTTTGTCTTTCAAAGCCTgttcaatattcactctctgtgGCAACTGCTTGAAAAAACAATTAATAATACATCATTACGGTAATAACTTCAAGTGGATGTCCGACAGCACTGCTGGCAGCTAAAGCTTTCTCCGTCAGTTTTGAGTCAATGATCTGGTGCCTCAGGTGTCAATTGTAACAGCTTATAAGAGGTAATGTAAAACAAGTGAATGAATAAAAGGCATTAAATTAATAGAACAGCATAGTTGAGGTATAGCTTTCAGCGATGCTCTCACCCAGTGGCTTTCCTTACACTGCTTCCAGACTAAATAAACCTCATATCAACACAGGATGGAAATGTCTGTCGACTTACTGTGCTCTTGCTCcagtaaaacacaataaaatacaattttggCACCAAGATTttaaaatataggctatatatatacttttgatTGATTCTTTTAGTGTGaggtaaattaaataaacaatgaTCCCCCTCTGTTCATTGAGGGAGTTCTAACTCTTTtctaaaactttttttctttttcctgccGAGGCAATGGTCAGACATCATGAACATGTTGGAGGATTTATTTCTGTGTTGATATACTGAGAGCTTAAACTTAAGCTTTAACCTTAAGTTAAACTCATTTTCAAAACTCACATTCAAACATATGTCTTCTTCTGACTACAAGGCAATTTAAGAGCTTTTTCTGGAAAATATTAACTgaacaaaaagttaaaaaaaaaacaacaaagaaaaataaaacgttCATAGCGCTTTAAGTTGTATAGCTCTGATGTTAAATTGTGGAAAAACACACATTAGTGCTATATCCCAATGTAAAATACATGTCAGAACTCACTATGTGATcattttttaaaatcattttaaactaattatatttaaatgtgAAACGGCTGTTATCCCTGtcataaacaaaaacataacactATTTAACATTATAACAAAAACGTTAAGTTAAAGTTACTGACCTATACTTTCAAACACTGCCAACATATCTAAAACACGTTTGTAGAAACAGTGAAATAAGCAGTATTAATGGAGGAGATATAATTTCATAATTACAGTTTGTCTTACCATCAACTAATCGTCAACGTGTGCaacaattacaacattacagtcttaacttttatcaatattaaaaaTACACAGTAGCTTTATCATGGAAAAATATACTTACTAAACGCTAACAGAAACAGCagatttcctttttcataaaagtTTCCTCTCACTTTTCTTCTCGACCGCAGTTttcctctcacacacatgcgcacTTCACTCTCAGCCAAATGTTCATCGCCCTCATGTAAACTACACTGTAACAAGCTGGAGGCTGCCGTCACTTTTAAAACACTGTCTCCTGTACACGCCTGCAAATGTGTGGTGTCAACTTACAAGATCGTGtaaggtagctagctagctactgaacacaCGTCGTTTGTTTGGCTTTCTTTGTCACGTTTTAACAACGCGAGAAAAGTTTTACTAGAAAACTTTATTCGACATAGTATAAGCAAACTATGAGTCCGTTTCtaataaaaaacattcaaatttgGCCCAGGTTGAATTTATTGGTGTGGTTGCTGGCTGATTTTTGCTGATCTCGACAGCTAACGGGAAGTGAACTTGGTTTCCATAGAAACGCAGTTCCAATGAAACGGTGCATAAAGACATGAAAgcaaatttgaaaacaaaaaggttttttatttaatggttgtttttttggttCGGATTGCATGTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38953 lncRNA upstream 74773 23286897 ~ 23294407 (+) True G29323
TU38918 lncRNA upstream 208263 23160593 ~ 23160917 (+) True G29294
TU38912 lncRNA upstream 208784 23159951 ~ 23160396 (+) True G29288
TU38893 lncRNA upstream 279600 23045293 ~ 23089580 (+) True G29271
TU38881 lncRNA upstream 344426 23021429 ~ 23024754 (+) True G29262
TU39015 lncRNA downstream 44615 23418711 ~ 23421738 (+) True G29378
TU39019 lncRNA downstream 142421 23516517 ~ 23517263 (+) False igdcc3
TU39052 lncRNA downstream 222356 23596452 ~ 23599250 (+) False G29410
TU39057 lncRNA downstream 222356 23596452 ~ 23599696 (+) True G29410
TU39058 lncRNA downstream 226405 23600501 ~ 23600768 (+) True G29411
XM_039795219.1 mRNA upstream 14979 23345487 ~ 23354201 (+) True tmem276b
XM_039795217.1 mRNA upstream 25972 23328610 ~ 23343208 (+) False slc39a13
XM_039795218.1 mRNA upstream 25972 23328613 ~ 23343208 (+) True slc39a13
XM_039794303.1 mRNA upstream 114595 23219189 ~ 23254585 (+) False lgr4
XM_039794304.1 mRNA upstream 114595 23228908 ~ 23254585 (+) True lgr4
XM_039795792.1 mRNA downstream 69053 23443149 ~ 23516756 (+) True igdcc3
XM_039795662.1 mRNA downstream 176096 23550192 ~ 23568550 (+) True LOC120556218
XM_039795663.1 mRNA downstream 177816 23551912 ~ 23568550 (+) False LOC120556218
XM_039795661.1 mRNA downstream 188078 23562174 ~ 23568550 (+) False LOC120556218
XM_039795600.1 mRNA downstream 493858 23867954 ~ 23870221 (+) True terb2
TU38916 other upstream 232153 23136732 ~ 23137027 (+) True G29292
TU38851 other upstream 376678 22992137 ~ 22992502 (+) False LOC120555548
TU38801 other upstream 487528 22764719 ~ 22881652 (+) False ankrd11
TU38802 other upstream 487814 22867720 ~ 22881366 (+) False ankrd11
unassigned_transcript_140 other upstream 821908 22547201 ~ 22547272 (+) True trnag-ucc_7
TU39086 other downstream 352916 23727012 ~ 23731706 (+) True G29433
XR_005638781.1 other downstream 861628 24235724 ~ 24309279 (+) False plekha7b
TU39283 other downstream 1077216 24451312 ~ 24454877 (+) False sox6
TU39277 other downstream 1077278 24451374 ~ 24454877 (+) False sox6
XR_005638876.1 other downstream 2590583 25964679 ~ 25964758 (+) True LOC120556589

Expression Profile