RNA id: TU39118


Basic Information

Item Value
RNA id TU39118
length 1669
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id G29460
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 23960107 ~ 23962332 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgaaatattacattttaaagtgcagtgtgaTATGTGTTTTGAAGGTTAATTGTTATCACATTCATTATATATGTTACAAACTGTATGAACCATAATGGATCATCCttgggctttattgtgttatccaTGAGATGAAAATGttgctttgattttcatttaaattaaagTAAGCCCATTAGTTAAATCACAAGGACAATTCTCTCTAAAGCACTTAAGCCTCAGATTTTAGGGACAAAAGGACAGCATTGCCACTTTGTGGCTATGTCTTAACATTACATCTGAATTAAGCACCAATAGCACAATCACAGATGGACAGGGATGAAATCTGACACATTCAATTCACAAATGCCTCAGAGAACCAGACATAATCCCTTTGtaaggcgacattaaagaattAGTTCTcactcattttcaaaaaatagcAATTTATGACCTGTCAATCAAGTCATGTGTGCTAAAATGTACAGAACATAGCTTTTTCATTGCAGAAAAGTTAAAATTACTAGAACAAAAAAGGATAGCAGCCAATTGTATTAGTGATACACAGCCCATCATTTGACAACATATTGAGGGCATTATGTATGTGTCTATAATCCGCGGTTTGCTCAAAAATATGATCATTGACAATTATGTTCTAATTATCATTTAatgattttgttgttttatcaCTGTCCAATGTCAAAGAATGTTGTCACTGCTGCATTATGTTTGTTGAGTCATCATTCAGTAACTTTTTGGTCTTTTTGCCTTCTTTCAGTAGGCTAATGATGGCTGGTTCAAAAGGCAGGAGAAGCCAAAAGTGCATGGCTCAGAAGTGTATGgtaacaacaaacacaacagaaCAGTAAACAGGGTAAAATTAGGCTACGTGACCAAACAAAACGTCtattgtaaatgtgtgtttacaATATACAGTGTAAAACACTGTCTACTGTAGCTGTATTGTCAATAACTCAAACAGTATATATTTCTTTTAGTAGTTTTATTATCAGTGGTTGATGGCTTTCATACTAATATTTTCCAGGAAGTCCTGGTGGCCTGTAATCGTTGGGATCTCCTCCGCTGCGCCCATGCTCATTTGCCTTCTGATCAGCAGCAGAGTCCTCAGCACCATGACCAGTTCTTTCCTGCACCCACTCTCTGGCATTACTGTAACCTCAGCTGCCCATCTTCCCCCTGCTCCTCTGCTGGCAGCATCACTGTTTCCTCTGGCATGAAAGTATTTGTCTGAGTCTTTCCAGTTGGCCTCCCTCATATCACTGTATCCTCGCCACATATCACCAGCTCCTGAAGGCTTCACGAGGAAAGTTGTACCACTGGGCATTGGTTTCCACAATTAGAATCAGAACAATTCCTGCTAGAAGCAACTTCATGGTTACAGATgTTTAAAGTTACTTCAGAGTATAGAATAAGTCTTAAAAGATTGTGGAGTATCTTATCAGTGAGGACTCTAAAGATTTGACTCTACTTATATTCTGCTGGGATGTAGGATTTCTCAATGACGGAAATTCCCGTCCATTTGAGGGACGGTTACAGATCAGAAATGTCAGGCAAAGACACTGAGGATATTCCCTAGTTGTGCAACTGCACAGCAAAGGCCTCCTACTTCATACAATGATTGTTTCTCTTAAGATGTAGTTTCTTTTTGCTGTGAAATATTTGTGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39096 lncRNA upstream 80665 23816706 ~ 23879442 (+) True G29441
TU39092 lncRNA upstream 216218 23742705 ~ 23743889 (+) True G29438
TU39087 lncRNA upstream 227636 23727012 ~ 23732471 (+) False G29433
TU39083 lncRNA upstream 237457 23721197 ~ 23722650 (+) True G29432
TU39069 lncRNA upstream 343161 23615596 ~ 23616946 (+) True G29421
TU39145 lncRNA downstream 188178 24150510 ~ 24150755 (+) True G29477
TU39240 lncRNA downstream 264519 24226851 ~ 24227916 (+) True G29535
TU39280 lncRNA downstream 488626 24450958 ~ 24454877 (+) False sox6
TU39278 lncRNA downstream 489042 24451374 ~ 24455669 (+) False sox6
TU39279 lncRNA downstream 492901 24455233 ~ 24455669 (+) False sox6
XM_039794767.1 mRNA upstream 84587 23871057 ~ 23875520 (+) True sord
XM_039795600.1 mRNA upstream 89886 23867954 ~ 23870221 (+) True terb2
XM_039795662.1 mRNA upstream 391557 23550192 ~ 23568550 (+) True LOC120556218
XM_039795663.1 mRNA upstream 391557 23551912 ~ 23568550 (+) False LOC120556218
XM_039795661.1 mRNA upstream 391557 23562174 ~ 23568550 (+) False LOC120556218
XM_039795427.1 mRNA downstream 8366 23970698 ~ 24071149 (+) False syt7b
XM_039795426.1 mRNA downstream 8369 23970701 ~ 24071149 (+) True syt7b
XM_039795428.1 mRNA downstream 8371 23970703 ~ 24071149 (+) False syt7b
XM_039795430.1 mRNA downstream 59105 24021437 ~ 24071149 (+) False syt7b
XM_039795501.1 mRNA downstream 118317 24080649 ~ 24085815 (+) True LOC120556108
TU39086 other upstream 228401 23727012 ~ 23731706 (+) True G29433
TU38916 other upstream 823080 23136732 ~ 23137027 (+) True G29292
TU38851 other upstream 967605 22992137 ~ 22992502 (+) False LOC120555548
TU38801 other upstream 1078455 22764719 ~ 22881652 (+) False ankrd11
XR_005638781.1 other downstream 273392 24235724 ~ 24309279 (+) False plekha7b
TU39283 other downstream 488980 24451312 ~ 24454877 (+) False sox6
TU39277 other downstream 489042 24451374 ~ 24454877 (+) False sox6
XR_005638876.1 other downstream 2002347 25964679 ~ 25964758 (+) True LOC120556589
XR_005638875.1 other downstream 2003845 25966177 ~ 25966255 (+) True LOC120556588

Expression Profile