RNA id: TU39145


Basic Information

Item Value
RNA id TU39145
length 246
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G29477
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 24150510 ~ 24150755 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tatttttgtcaaCTTCAATTACTGTGATACTCTTGCGGGTTGTGCGATCTCATTTCAGCACTCGTGTCCCTTCAAAGAGACTGAAATGCATGGGGATTTCAGTATGTGACTAAATGATGACACAATATTTTGGCAGGGTGGTGCAATGCAATAAGACACTGCAAATTCATTGGtttttttacaacagcaggCAACGTATTCACAAGTTGTGTCCAACCAGTATCTTTAGCTGATGACTTGAAAGCC

Function

GO:

id name namespace
GO:0005102 signaling receptor binding molecular_function
GO:0005515 protein binding molecular_function
GO:0005179 hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39118 lncRNA upstream 188178 23960107 ~ 23962332 (+) True G29460
TU39096 lncRNA upstream 271068 23816706 ~ 23879442 (+) True G29441
TU39092 lncRNA upstream 406621 23742705 ~ 23743889 (+) True G29438
TU39087 lncRNA upstream 418039 23727012 ~ 23732471 (+) False G29433
TU39083 lncRNA upstream 427860 23721197 ~ 23722650 (+) True G29432
TU39240 lncRNA downstream 76096 24226851 ~ 24227916 (+) True G29535
TU39280 lncRNA downstream 300203 24450958 ~ 24454877 (+) False sox6
TU39278 lncRNA downstream 300619 24451374 ~ 24455669 (+) False sox6
TU39279 lncRNA downstream 304478 24455233 ~ 24455669 (+) False sox6
TU39281 lncRNA downstream 304478 24455233 ~ 24455688 (+) False sox6
XM_039795507.1 mRNA upstream 605 24127460 ~ 24149905 (+) True ext2
XM_039795505.1 mRNA upstream 24690 24093243 ~ 24125820 (+) False dagla
XM_039795504.1 mRNA upstream 24690 24093243 ~ 24125820 (+) True dagla
XM_039795506.1 mRNA upstream 24690 24093243 ~ 24125820 (+) False dagla
XM_039795501.1 mRNA upstream 64695 24080649 ~ 24085815 (+) True LOC120556108
XM_039795036.1 mRNA downstream 55956 24206711 ~ 24222446 (+) False caprin1a
XM_039795034.1 mRNA downstream 55959 24206714 ~ 24222446 (+) True caprin1a
XM_039795035.1 mRNA downstream 56210 24206965 ~ 24222446 (+) False caprin1a
XM_039795229.1 mRNA downstream 84968 24235723 ~ 24314645 (+) False plekha7b
XM_039795234.1 mRNA downstream 84969 24235724 ~ 24314645 (+) False plekha7b
TU39086 other upstream 418804 23727012 ~ 23731706 (+) True G29433
TU38916 other upstream 1013483 23136732 ~ 23137027 (+) True G29292
TU38851 other upstream 1158008 22992137 ~ 22992502 (+) False LOC120555548
TU38801 other upstream 1268858 22764719 ~ 22881652 (+) False ankrd11
XR_005638781.1 other downstream 84969 24235724 ~ 24309279 (+) False plekha7b
TU39283 other downstream 300557 24451312 ~ 24454877 (+) False sox6
TU39277 other downstream 300619 24451374 ~ 24454877 (+) False sox6
XR_005638876.1 other downstream 1813924 25964679 ~ 25964758 (+) True LOC120556589
XR_005638875.1 other downstream 1815422 25966177 ~ 25966255 (+) True LOC120556588

Expression Profile