RNA id: TU39280


Basic Information

Item Value
RNA id TU39280
length 3920
lncRNA type sense_over
GC content 0.38
exon number 1
gene id sox6
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 24320064 ~ 24455688 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCATGGACATTACACATATAGGTCATTGCCTAGAACAAAAGACGGAACTTGAAATTGAGCATTTGATATGAACCTATAATTCTTACAGTCATTTACTTTGTTTTCCTCTTCAATTGGATGATTTTGATATATTGCATAACTGTTCAAGATGGGGATAATATTCTCACTCAGGTATAGTGTGCCAGCCAACAGCTTGTGAATGtttttaatcaataatgaattATTACCAGTACAAAATATCTCAAAATTCATATGGAGTGATTCCAACTTATTACAGAGGGAAactacacattattattattattattattattattattattattattattattattagtgttttgttattgttattacacaaaCTGCATAATTTAATGCAGAAGTGCCAAACATTTCAAGTTGTTTCTAAAATCTGTAAAGTCATTTGGGAGAGGCTTCATGAGTCTTGGACAATCTCTTGATCTCTTAATACAGCTTCATTATCCAGTCTTTCTTTAATTTACagaataaacaaatgaaactCAGGAACTTGGAGGCAGCAGGCTCTGCAGGAGGTTACAGTATGCAGCATCTGTGGGTGGTAGCTTGTGATGCTAGCTGTTCTCCAGGGAGCCCAATGCAGTGATCATCAATAAATGGGGCCAGCCCTTACACGTCCTCATCCCAGTCCACACAGAGCACAGTGGCGTCCTTAACTCATTTTCAGCTCTGCAACCCAGTCTGAATCACCAAGTTCTTAATCAGAGTGATTGTAATCAGGCCAGAATGCTAAAGGGCCAAAGGCCTCCAATCTGGGATTGGAACAGCAGTGAAAGGCAGCTTTGGGGGCATTACAATCTCAAATTGATGTTGTACAATGTGTAGCTACAGTACGTTCTGTTAAACGCTTTAGCCCTATTTGGATGGCAAGTTTAAAGTCTTACGTCTTagaacttcattttttttttcttttccaatcTTAATTCTTTTTAGACATTGTAAATCTTAAATTGACACTAAGAAGTCTTAAAGCAGAGCACGGCCATCGGGTTGATGCAATGAGTTGATTACTGCCGTAGTCTTAAGAGGAGTGACAGTTTAGGAGGACATTTATAAACTGAGAGAGAGGCTAAAATCATGTTTGTTTCTTAAATTACCTCCTCATACATGCATGACTGGGGTAACTTAAAACACCGATTTTTGCATTAGTGCACTTATACAAATCTTGTTCTGTCACACTTGAGCCGtatgttgttatttttaaatACTCTTATCAGCTTTTGCAATGCACTTAACGCTTGCATTTAAAACAGGAAAACATGCAATGACTCAAACACAAGGGGCACAAAGTCCTAATGTCAGCTAAAAAGCTGACAAGTGGTGACCTTCTGGAGACTGCAGCTAGATAAAGCAAGGCCTTGATGTTGAGATTCAGATCCTCTTTACAGGGCAGAAGGTCTAAGTGGCTCCCCTCCCTGCCATGCCCTGCTCTGACCCCTGCCCGTGGCAACCTCAGCACCCAGGGGGCGCCATCTGGCTCAGAGAAGGAGAAAACACCAGGGAGGGATGGGAAACAATAAAAATGGGGTGTGTGTCCCTCATTGTGCTCTCCATCAAAGTGCTGGTAGTAAGGCCTCAACAGGGCTCCCACCCTGGCCCAATCACCAGGCACTGGCGAGCAGATGGAACAAGTACATCAAGCTGTGGGGGATTATTAAAATGACTGACGACTGGGTATCATCTGAAATACAGCATTATTAATGCATGAGTCTAGCTATTCCCCTCCCTTGCCCTTGCCCTTGAACCTGTTAATTTCAGACAGAGCTGGATGGCTGGTCACTGGCCTTAACTGTTCAAGATCCCACTGCTGGTCACTGCATTTTTCTCCTAGCTCTAATTGGTACAGATGGCTCTATATATATCTGTTACGCACTCATATCTTCTGTACTCTTATTGTCAATATCAGTGCTGGCCTGTGTTGCTTCTACTTTGGGAAGCATTTATATTAAGTATTGTAGGTTTTTAAACCACCCCATTCATAATTCCTGTTTAATTTTCTTTCTCCATCACATATTTTCTACATTGTTCTCATTTTGCGGTACAAAACATTTTAAGGATGCTCTTCTGCAAACAAACCCATGTGGATTTCCCTCCAAGTCGACCTGTTTGGTATTTTGAAGCTGTTTTGCTCCTGTTTGCTGGTGGTTAGATTGATTTGTATGTGATTGTAAATATTTTCATGGCCATGCCACACTGCTTTAGTTTGGCTGGTTGTTAAAAAGGACTCTTCACGGAACTGAAACTTGACTGTGCTTAtatagcaacaaaaaaaaagacaaaaaaggaagaaagaaaaaaatgacaagaacTCACAAGGAGACGATGTATTATAAGTGTTATAAGCACTGGatataaattgtatttttatcaATTCTGATTAATGTGAAGctgtttaagaaaaaaaaaaaacaccatgaaTGAACAAAATTCACCAGTTGGACTCAAGTGGGTTTGCTCTCACAGTTGCCagatttgagtcatttttttgtctacttattttgtttatttatgcaAAGACTCGATGTGTTGAATGAACACTTTGTTTAAGCTTCAGGGCTGCCTAAGGGGAGAGACTCAGCACAAGAAAGTGAGCAGAAAATTCAACAGCAGGCTCAGTTAGCCGTCTAACACCAGACTTCAGTGCattgtatattgtatttgtAGAGTAtcaacatattttatttattattagccACTGCTGGCTCTAAAATTGTcagtaaaacaacaacaacatggacaatcagagaaatcaaaaaaaacaaaaccggTTTAAGGAATTGGGAGCTAAAAATGGTTTTCAGTTAATTCACCATCTCATTTAGATTTTATTGTAAATATAACATaggaaatatatttttgttcattaGTGAAGTATAAGTTATGTATTTGGctgttctattttatttttgtatgtggTTTCATGTTTTTAAAACCTGACAAGTCACTGTACCTCATGCAGATGCTGATTTCTTTCTGCTTATTGGAAGAGAGCAGCATTGGacctgagacagagagaagcaCCTCACTTGCTTATATTTTGATAGTCTTCTCTGGACTATTCAAAGAAccaatcaaaataaaagctataCTCATTGGACTTGTTAAAATAAAGGAGTCATTACTAGTAAGGTACTCATTAAAACAACAAGCACTTGATGTAAAAGAATTACTCAATTTGTTTCCAATCTTAGTGGTATGCTGTATGTCCTcacttgtgttttgtgttattaCAGCACTCTTTCTATGCGGCAAAAATCTGCATGCATTTGGCTTGCATTCACATTACCATAATAAACAAAggtgttttctttttgaaagatTGTTTCAAACACAAGTGatgattttaaatgtttgttttttttaaagaggtgGGAGCgtgcaaatatttatttgttttaatgtggCAAAATGCACAGACattgtgcattcttcttagttAATTCTCTCCTTGTCATCTTTTTGTATGTTGCTGATTTTTAATGAACATGTTCATGACTATCCAGCCATCTGCAAATGTAGCCCTCATTGTTTTCTCCTAATCCATCTGCAATGGTTTGAACGAAAAACTGAAGACAAAAGCTTGTATGCTGTTTCAACATTACTTACtgtaatttgatttatttttatttttctgtctgaACGTTGTGATGTATATGGTGGGAATGTTCTCCGTGTTAATTTAATCAGCACAATTCACTGACATGCTGGACTGACATGCTAGCTGCTGTTCAGAAGTGTACAATTTGTTGTTCGGGGCAACATCTATAGTTGTCTTTGGTACTTTGCTTTTTAGAGTTGTCTCTCAAGCAACACTGTGTGTGGCTCTTCTATCACTGGAGCCGTTGTTTTGAAATTGCTGGCAGCCTGAAACAATTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39240 lncRNA upstream 223042 24226851 ~ 24227916 (+) True G29535
TU39145 lncRNA upstream 300203 24150510 ~ 24150755 (+) True G29477
TU39118 lncRNA upstream 488626 23960107 ~ 23962332 (+) True G29460
TU39096 lncRNA upstream 571516 23816706 ~ 23879442 (+) True G29441
TU39092 lncRNA upstream 707069 23742705 ~ 23743889 (+) True G29438
TU39279 lncRNA downstream 356 24455233 ~ 24455669 (+) False sox6
TU39281 lncRNA downstream 356 24455233 ~ 24455688 (+) False sox6
TU39299 lncRNA downstream 148105 24602982 ~ 24605198 (+) True G29579
TU39426 lncRNA downstream 643293 25098170 ~ 25099593 (+) True G29685
TU39510 lncRNA downstream 766169 25221046 ~ 25221437 (+) True G29747
XM_039795288.1 mRNA upstream 302 24320064 ~ 24450656 (+) False sox6
XM_039795295.1 mRNA upstream 302 24320066 ~ 24450656 (+) False sox6
XM_039795285.1 mRNA upstream 302 24321619 ~ 24450656 (+) False sox6
XM_039795293.1 mRNA upstream 302 24321619 ~ 24450656 (+) False sox6
XM_039795291.1 mRNA upstream 302 24321619 ~ 24450656 (+) False sox6
XM_039795875.1 mRNA downstream 162679 24617556 ~ 24621883 (+) True LOC120556334
XM_039794995.1 mRNA downstream 233149 24688026 ~ 24700170 (+) True copb1
XM_039794996.1 mRNA downstream 247980 24702857 ~ 24737053 (+) True rras2
XM_039795639.1 mRNA downstream 283751 24738628 ~ 24787768 (+) False tub
XM_039795640.1 mRNA downstream 283751 24738628 ~ 24787768 (+) False tub
XR_005638781.1 other upstream 141679 24235724 ~ 24309279 (+) False plekha7b
TU39086 other upstream 719252 23727012 ~ 23731706 (+) True G29433
TU38916 other upstream 1313931 23136732 ~ 23137027 (+) True G29292
TU38851 other upstream 1458456 22992137 ~ 22992502 (+) False LOC120555548
TU38801 other upstream 1569306 22764719 ~ 22881652 (+) False ankrd11
XR_005638876.1 other downstream 1509802 25964679 ~ 25964758 (+) True LOC120556589
XR_005638875.1 other downstream 1511300 25966177 ~ 25966255 (+) True LOC120556588
TU40247 other downstream 3010901 27465778 ~ 27467021 (+) True G30295
TU40331 other downstream 3020278 27475155 ~ 27486736 (+) False ogfod1
TU40340 other downstream 3032800 27487677 ~ 27488791 (+) True G30366

Expression Profile