RNA id: XM_039795290.1


Basic Information

Item Value
RNA id XM_039795290.1
length 7815
RNA type mRNA
GC content 0.43
exon number 17
gene id sox6
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 24320064 ~ 24455688 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGGCCACTCACTTTCTGATGTTGCACGACGGGAAATGCTTTGAATACTTGCGACATGGCTGCGCGCATTGATTGCCAAGATTGACAGCAGCTCTAACCATCGTATTCTCTTGTCTGAGTGTCAGTGAGGCAGATAAAGAACAGATAGGCGACCAACAAAAGGTACTTGTAGTTTTGGACAGCTGAACTTCACAGAGAGTAGTGCACGGGATCCCCTCATATGGCCCCGTGAGCAGACTTAAGTTTTCGCTCAACAGATAGCTCAGTGATCATTTTCTACAAAGTGTAGCCTAGTCTAGTAGTTTACGCACGGGAGAGGACGCATAACTATCTTCTTCACGGCTCAGATCATCAAGGTTTTTACATGAATTCAAAATCAACCGACCAGTGATCGCTGGAAGCTGGGGATTGAGTCTTTCAGTTTTTAACCCCACACGCTGACATGGAGGGCTTTCTTCGTAGCAGCTTTTTACTGAGCAGAGTCATGTCTTCCAAGCAAGCCACGTCTCCTTTTGCCTCTGTGGTCGATGGGGATGATGCCATGAGTCAGGAACACTTGTCttgggagaaagaggagagtgcCGAGGCCCATGGCACACCACAACTGCCCCTGCACAGCCTGCTCCATGGAAAAGCCCATCCTGATGAAATGCAGCCACTCAGCAGCGTGCCGGCAGAGAGCGACTGGGACAGCTTGGTGTCAGCCCAACAGCGCATGGAATCTGACAGCAATAAAGTATGTTCCCTGTACTCCTTCCGGAACAATTCCACCTCCCCACACAAGCCGGAGGAGGGAGCCCGGGAGCGAAGTGACCTGCTGAGCGGATCTGCGTTTGGAACTCCGGAGCGCCGCAAAGGAAGCCTGGCAGACGTAGTGGACACGCTGAAGCAGAAGAAACTCGAGGAGATGACAAAGACAGAGCAAGACGaTCCCTCATGCATGGAGAAACTTCTTTCTAAAGACTGGAAAGAGAAGATGGAGAGGCTCAACACCAGTGAACTGCTGGCAGAAGTAAAAGGTACTCCAGAGAGCCTAGCAGAAAAGGAACACCAGCTCTCCACAATGATCAGCCAGCTGATCAGCCTGCGCGAGCAGCTTCTGGCTGCCCACGATGAACAGAAGAAGCTCGCCGCCTCACAGATGGAGAAACAGAGGCAGCAAATGGAGTTAGCTCGTCAGCAGCAGGAGCAGATTGCAagacaacagcagcagcttctgcagcagcagcacaaaaTCAACCTCCTCCAGCAACAGATCCAGCAGGTCCAGGGTCACATGCCTCCGCTCATGATCCCCATTTTTCCACACGACCAACGCACTCTGGCAGCAGCGGCAGCCGCCCAGCAAGGATTTCTCTTCCCTCCAGGAATGTCTTATAAGCCAGGTGATAACTACCCGGTGCAGTTCATTCCATCCACAATGGCAGCTGCAGCAGCGTCAGGACTCAGCCCCCTCCAGCTTCAGCAACTGTATGCCGCCCAGCTTGCCAGCATGCAGGTCTCTCCTGGAGCCAAGATGCCTCCACTCCCCCAGTCCCTCAATGCTAGTGGGCCCATTTCTCCCTCTTCTCTGAAGAATGACAAGAGTTCCTCCAGCCCCATCACTCACGTCAAGGAGGAGGGAACACAGCCGCTCAACCTGTCTGCTCGGCCAAAGACGACGGATCTTGTCAAATCCCCCACATCCCCGACACAAAACCTGTACCTCGGCAGTAAAAGCAGCCCTAACAGTCTCCTCGGCAAGGGTGGTATCCCCAGCCCACTCGGAGGAGGCCTGGGCCGGGGCTCATCTCTGGatattCTGTCCAGCCTAAACTCTACCGCGTTGTTCGGGGACCAGGACACAGTGTTGAAGGCCATCCAGGAGGCTCGGAAAATGAGAGAGCAGATCCAAAGGGAACAGCTGCAACATCACCAGCAGGGCATGGAGGCAAAGCTGTCCGCCCTCAGTTCAGTGGGCCTCAACAACTGCAGAGTTGACAAGGAGAGGGCGCATTTTGAGAGCATCGGGCACCACCTTGGCAAGCTGGGTGAGGAAGGAAAGATCGGCCACAGAGTTATTGACCTTACCAGGCCAGAGGATCTTGATGGAGGCGCTGGATCTACCGAGGCGCGAGTCTTCAGGGAAGCCCGAGGAAGGAACAACAACGAGCCCCACATTAAAAGGCCAATGAATGCATTCATGGTGTGGGCCAAGGATGAGCGGCGCAAGATCCTCCAGGCCTTCCCCGATATGCACAACTCTAACATAAGCAAGATTTTGGGTTCTCGGTGGAAGTCCATGACTAACCAGGACAAGCAGCCATACTATGAGGAGCAGGCCCGTCTGAGTAAGCAACACCTAGAGAAGTACCCAAACTACAAGTACAAGCCACGGCCTAAGAGAACCTGCATTATCGACggaaaaaaactccgcattggAGAGTACAAGCAGATGATGCGCTCACGGCGACAAGAGATGAGGCAGTTCTTCACTGTGGGACAGCCACCACAAATTCCCATCACCACCAGCGCCAGTATGGTCTATCCTGGGGCCATCACCATGGCGACCACCACACCCTCACCTCAGATGACATCAGAGTGCTCGAGTGCCTCAGCGAGCCCCGAGCCATCCATTCCTGTCATTCAGAGCACCTACAACATGAAGCTAGAGCCCAACACCATGGCAAACAACAGTGTGCCGGTCAATGGCGAGGATGAGATGGACATGTACGAGGATTTTGAGGATGAGCCCAAATCAGACTATAGTAGTGAAAATGACGCACAAGAGCCAGTCAGCGCCAACTGAGACCTCTTTAATGGAAGATGCCAATGGAGACACAACATTCATACAGGAGGATGCCCAGAGGGCTGGTATGATCTGAGGGAGCGAAagagcaaaagaaaacaaaactacaccacaaaggttaaaaaaaaagaaaaaaaaaaaagaagaagtataATTTGGTAGCCTGCATGCAGATTTGGCTTCATCAGAATCAAAAGCTATTTGGTCTTAAGTGTTTATTCAAGTGTGTGAAGCAGTTTGGTTGTGgtaatttagatttttctttttttttttatctcaatgtttattttattcattgtgATCATGGACATTACACATATAGGTCATTGCCTAGAACAAAAGACGGAACTTGAAATTGAGCATTTGATATGAACCTATAATTCTTACAGTCATTTACTTTGTTTTCCTCTTCAATTGGATGATTTTGATATATTGCATAACTGTTCAAGATGGGGATAATATTCTCACTCAGGTATAGTGTGCCAGCCAACAGCTTGTGAATGtttttaatcaataatgaattATTACCAGTACAAAATATCTCAAAATTCATATGGAGTGATTCCAACTTATTACAGAGGGAAactacacattattattattattattattattattattattattattattattattagtgttttgttattgttattacacaaaCTGCATAATTTAATGCAGAAGTGCCAAACATTTCAAGTTGTTTCTAAAATCTGTAAAGTCATTTGGGAGAGGCTTCATGAGTCTTGGACAATCTCTTGATCTCTTAATACAGCTTCATTATCCAGTCTTTCTTTAATTTACagaataaacaaatgaaactCAGGAACTTGGAGGCAGCAGGCTCTGCAGGAGGTTACAGTATGCAGCATCTGTGGGTGGTAGCTTGTGATGCTAGCTGTTCTCCAGGGAGCCCAATGCAGTGATCATCAATAAATGGGGCCAGCCCTTACACGTCCTCATCCCAGTCCACACAGAGCACAGTGGCGTCCTTAACTCATTTTCAGCTCTGCAACCCAGTCTGAATCACCAAGTTCTTAATCAGAGTGATTGTAATCAGGCCAGAATGCTAAAGGGCCAAAGGCCTCCAATCTGGGATTGGAACAGCAGTGAAAGGCAGCTTTGGGGGCATTACAATCTCAAATTGATGTTGTACAATGTGTAGCTACAGTACGTTCTGTTAAACGCTTTAGCCCTATTTGGATGGCAAGTTTAAAGTCTTACGTCTTagaacttcattttttttttcttttccaatcTTAATTCTTTTTAGACATTGTAAATCTTAAATTGACACTAAGAAGTCTTAAAGCAGAGCACGGCCATCGGGTTGATGCAATGAGTTGATTACTGCCGTAGTCTTAAGAGGAGTGACAGTTTAGGAGGACATTTATAAACTGAGAGAGAGGCTAAAATCATGTTTGTTTCTTAAATTACCTCCTCATACATGCATGACTGGGGTAACTTAAAACACCGATTTTTGCATTAGTGCACTTATACAAATCTTGTTCTGTCACACTTGAGCCGtatgttgttatttttaaatACTCTTATCAGCTTTTGCAATGCACTTAACGCTTGCATTTAAAACAGGAAAACATGCAATGACTCAAACACAAGGGGCACAAAGTCCTAATGTCAGCTAAAAAGCTGACAAGTGGTGACCTTCTGGAGACTGCAGCTAGATAAAGCAAGGCCTTGATGTTGAGATTCAGATCCTCTTTACAGGGCAGAAGGTCTAAGTGGCTCCCCTCCCTGCCATGCCCTGCTCTGACCCCTGCCCGTGGCAACCTCAGCACCCAGGGGGCGCCATCTGGCTCAGAGAAGGAGAAAACACCAGGGAGGGATGGGAAACAATAAAAATGGGGTGTGTGTCCCTCATTGTGCTCTCCATCAAAGTGCTGGTAGTAAGGCCTCAACAGGGCTCCCACCCTGGCCCAATCACCAGGCACTGGCGAGCAGATGGAACAAGTACATCAAGCTGTGGGGGATTATTAAAATGACTGACGACTGGGTATCATCTGAAATACAGCATTATTAATGCATGAGTCTAGCTATTCCCCTCCCTTGCCCTTGCCCTTGAACCTGTTAATTTCAGACAGAGCTGGATGGCTGGTCACTGGCCTTAACTGTTCAAGATCCCACTGCTGGTCACTGCATTTTTCTCCTAGCTCTAATTGGTACAGATGGCTCTATATATATCTGTTACGCACTCATATCTTCTGTACTCTTATTGTCAATATCAGTGCTGGCCTGTGTTGCTTCTACTTTGGGAAGCATTTATATTAAGTATTGTAGGTTTTTAAACCACCCCATTCATAATTCCTGTTTAATTTTCTTTCTCCATCACATATTTTCTACATTGTTCTCATTTTGCGGTACAAAACATTTTAAGGATGCTCTTCTGCAAACAAACCCATGTGGATTTCCCTCCAAGTCGACCTGTTTGGTATTTTGAAGCTGTTTTGCTCCTGTTTGCTGGTGGTTAGATTGATTTGTATGTGATTGTAAATATTTTCATGGCCATGCCACACTGCTTTAGTTTGGCTGGTTGTTAAAAAGGACTCTTCACGGAACTGAAACTTGACTGTGCTTAtatagcaacaaaaaaaaagacaaaaaaggaagaaagaaaaaaatgacaagaacTCACAAGGAGACGATGTATTATAAGTGTTATAAGCACTGGatataaattgtatttttatcaATTCTGATTAATGTGAAGctgtttaagaaaaaaaaaaaacaccatgaaTGAACAAAATTCACCAGTTGGACTCAAGTGGGTTTGCTCTCACAGTTGCCagatttgagtcatttttttgtctacttattttgtttatttatgcaAAGACTCGATGTGTTGAATGAACACTTTGTTTAAGCTTCAGGGCTGCCTAAGGGGAGAGACTCAGCACAAGAAAGTGAGCAGAAAATTCAACAGCAGGCTCAGTTAGCCGTCTAACACCAGACTTCAGTGCattgtatattgtatttgtAGAGTAtcaacatattttatttattattagccACTGCTGGCTCTAAAATTGTcagtaaaacaacaacaacatggacaatcagagaaatcaaaaaaaacaaaaccggTTTAAGGAATTGGGAGCTAAAAATGGTTTTCAGTTAATTCACCATCTCATTTAGATTTTATTGTAAATATAACATaggaaatatatttttgttcattaGTGAAGTATAAGTTATGTATTTGGctgttctattttatttttgtatgtggTTTCATGTTTTTAAAACCTGACAAGTCACTGTACCTCATGCAGATGCTGATTTCTTTCTGCTTATTGGAAGAGAGCAGCATTGGacctgagacagagagaagcaCCTCACTTGCTTATATTTTGATAGTCTTCTCTGGACTATTCAAAGAAccaatcaaaataaaagctataCTCATTGGACTTGTTAAAATAAAGGAGTCATTACTAGTAAGGTACTCATTAAAACAACAAGCACTTGATGTAAAAGAATTACTCAATTTGTTTCCAATCTTAGTGGTATGCTGTATGTCCTcacttgtgttttgtgttattaCAGCACTCTTTCTATGCGGCAAAAATCTGCATGCATTTGGCTTGCATTCACATTACCATAATAAACAAAggtgttttctttttgaaagatTGTTTCAAACACAAGTGatgattttaaatgtttgttttttttaaagaggtgGGAGCgtgcaaatatttatttgttttaatgtggCAAAATGCACAGACattgtgcattcttcttagttAATTCTCTCCTTGTCATCTTTTTGTATGTTGCTGATTTTTAATGAACATGTTCATGACTATCCAGCCATCTGCAAATGTAGCCCTCATTGTTTTCTCCTAATCCATCTGCAATGGTTTGAACGAAAAACTGAAGACAAAAGCTTGTATGCTGTTTCAACATTACTTACtgtaatttgatttatttttatttttctgtctgaACGTTGTGATGTATATGGTGGGAATGTTCTCCGTGTTAATTTAATCAGCACAATTCACTGACATGCTGGACTGACATGCTAGCTGCTGTTCAGAAGTGTACAATTTGTTGTTCGGGGCAACATCTATAGTTGTCTTTGGTACTTTGCTTTTTAGAGTTGTCTCTCAAGCAACACTGTGTGTGGCTCTTCTATCACTGGAGCCGTTGTTTTGAAATTGCTGGCAGCCTGAAACAATTTTCTGCgtagaaatctttttttttttttttttttttttcttctggcaGGTACCTAGGCCCATGGCAAGTATTGTTTGGGTGTTATTAgagaacatgaaatacatagtGTCTGTTGCTGCTTTAAAAAAGGTTTATGtctgaatatgtaaatagtttatCATAATATCTTGTACAGTCCAATGTAAAGTTTTtaattcaacttaaaaaaaaaaatgttgccatCACATTTGTGTTCACATTCTTCTTTATACagtacaaaaaaatgtattatttgctAGGGGTATTAatactaaaaaaagaaaaaaagaaaaaaagaaaatgttaatttttttttttttttaaatgtttgttttgcttGGCTTCAAAGTGTACACCAGCAAGTCTTTGGTTTCCATGTGCAGTATTGACGTGAGGTAAACTTAAGGTGAATAATTTTACAGTGGTGTGTGTGGAGAACAGTCTCCTCGGCTTTGGTAGTATTAATACACTATATcaagtaaaaacaaaccaaTGAGTGACACATTTAGGTGCATCTAGGCACCACAGAAATGTGTATACTGTACATGATTAAATTACCCCCACAGGATCGATTCAGGCATATTATAATGTAACACCATTTTCTGTATGTCTCAGTCCATTGTAACAATGCAACAGTGGGATGAATAACTGCCTGTTTAAGCTCATTTACCTCAAGAACTTCCTCCTTTTCTGTAAGAGACAGAAATTGTGTTACAGAAAATTTCTCCCATCACTCCATCTTTTGTACTGCTGTTGACACTTAAAAATTAAAgagacattttgttttaaga

Function

GO: NA

KEGG:

id description
K09269 SOX5_6_13; transcription factor SOX5/6/13 (SOX group D)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39240 lncRNA upstream 93703 24226851 ~ 24227916 (+) True G29535
TU39145 lncRNA upstream 170864 24150510 ~ 24150755 (+) True G29477
TU39118 lncRNA upstream 359287 23960107 ~ 23962332 (+) True G29460
TU39096 lncRNA upstream 442177 23816706 ~ 23879442 (+) True G29441
TU39092 lncRNA upstream 577730 23742705 ~ 23743889 (+) True G29438
TU39299 lncRNA downstream 147299 24602982 ~ 24605198 (+) True G29579
TU39426 lncRNA downstream 642487 25098170 ~ 25099593 (+) True G29685
TU39510 lncRNA downstream 765363 25221046 ~ 25221437 (+) True G29747
TU39552 lncRNA downstream 962124 25417807 ~ 25420506 (+) True G29786
TU39559 lncRNA downstream 962124 25417807 ~ 25420067 (+) False G29786
XM_039795243.1 mRNA upstream 6974 24235725 ~ 24314645 (+) False plekha7b
XM_039795875.1 mRNA downstream 161873 24617556 ~ 24621883 (+) True LOC120556334
XM_039794995.1 mRNA downstream 232343 24688026 ~ 24700170 (+) True copb1
XM_039794996.1 mRNA downstream 247174 24702857 ~ 24737053 (+) True rras2
XM_039795639.1 mRNA downstream 282945 24738628 ~ 24787768 (+) False tub
XM_039795640.1 mRNA downstream 282945 24738628 ~ 24787768 (+) False tub
XR_005638781.1 other upstream 12340 24235724 ~ 24309279 (+) False plekha7b
TU39086 other upstream 589913 23727012 ~ 23731706 (+) True G29433
TU38916 other upstream 1184592 23136732 ~ 23137027 (+) True G29292
TU38851 other upstream 1329117 22992137 ~ 22992502 (+) False LOC120555548
TU38802 other upstream 1440253 22867720 ~ 22881366 (+) False ankrd11
XR_005638876.1 other downstream 1508996 25964679 ~ 25964758 (+) True LOC120556589
XR_005638875.1 other downstream 1510494 25966177 ~ 25966255 (+) True LOC120556588
TU40247 other downstream 3010095 27465778 ~ 27467021 (+) True G30295
TU40331 other downstream 3019472 27475155 ~ 27486736 (+) False ogfod1
TU40340 other downstream 3031994 27487677 ~ 27488791 (+) True G30366

Expression Profile