RNA id: XM_039795296.1


Basic Information

Item Value
RNA id XM_039795296.1
length 2404
RNA type mRNA
GC content 0.54
exon number 16
gene id sox6
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 24320064 ~ 24455688 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGAACGCAGGTTTCCTCATAAGGTTTTTACATGAATTCAAAATCAACCGACCAGTGATCGCTGGAAGCTGGGGATTGAGTCTTTCAGTTTTTCAGAGTCATGTCTTCCAAGCAAGCCACGTCTCCTTTTGCCTCTGTGGTCGATGGGGATGATGCCATGAGTCAGGAACACTTGTCttgggagaaagaggagagtgcCGAGGCCCATGGCACACCACAACTGCCCCTGCACAGCCTGCTCCATGGAAAAGCCCATCCTGATGAAATGCAGCCACTCAGCAGCGTGCCGGCAGAGAGCGACTGGGACAGCTTGGTGTCAGCCCAACAGCGCATGGAATCTGACAGCAATAAAGTATGTTCCCTGTACTCCTTCCGGAACAATTCCACCTCCCCACACAAGCCGGAGGAGGGAGCCCGGGAGCGAAGTGACCTGCTGAGCGGATCTGCGTTTGGAACTCCGGAGCGCCGCAAAGGAAGCCTGGCAGACGTAGTGGACACGCTGAAGCAGAAGAAACTCGAGGAGATGACAAAGACAGAGCAAGACGaTCCCTCATGCATGGAGAAACTTCTTTCTAAAGACTGGAAAGAGAAGATGGAGAGGCTCAACACCAGTGAACTGCTGGCAGAAGTAAAAGGTACTCCAGAGAGCCTAGCAGAAAAGGAACACCAGCTCTCCACAATGATCAGCCAGCTGATCAGCCTGCGCGAGCAGCTTCTGGCTGCCCACGATGAACAGAAGAAGCTCGCCGCCTCACAGATGGAGAAACAGAGGCAGCAAATGGAGTTAGCTCGTCAGCAGCAGGAGCAGATTGCAagacaacagcagcagcttctgcagcagcagcacaaaaTCAACCTCCTCCAGCAACAGATCCAGCAGGTCCAGGGTCACATGCCTCCGCTCATGATCCCCATTTTTCCACACGACCAACGCACTCTGGCAGCAGCGGCAGCCGCCCAGCAAGGATTTCTCTTCCCTCCAGGAATGTCTTATAAGCCAGGTGATAACTACCCGGTGCAGTTCATTCCATCCACAATGGCAGCTGCAGCAGCGTCAGGACTCAGCCCCCTCCAGCTTCAGCAACTGTATGCCGCCCAGCTTGCCAGCATGCAGGTCTCTCCTGGAGCCAAGATGCCTCCACTCCCCCAGTCCCTCAATGCTAGTGGGCCCATTTCTCCCTCTTCTCTGAAGAATGACAAGAGTTCCTCCAGCCCCATCACTCACGTCAAGGAGGAGGGAACACAGCCGCTCAACCTGTCTGCTCGGCCAAAGACGACGGATCTTGTCAAATCCCCCACATCCCCGACACAAAACCTGTACCTCGGCAGTAAAAGCAGCCCTAACAGTCTCCTCGGCAAGGGTGGTATCCCCAGCCCACTCGGAGGAGGCCTGGGCCGGGGCTCATCTCTGGatattCTGTCCAGCCTAAACTCTACCGCGTTGTTCGGGGACCAGGACACAGTGTTGAAGGCCATCCAGGAGGCTCGGAAAATGAGAGAGCAGATCCAAAGGGAACAGCTGCAACATCACCAGCAGGGCATGGAGGCAAAGCTGTCCGCCCTCAGTTCAGTGGGCCTCAACAACTGCAGAGTTGACAAGGAGAGGGCGCATTTTGAGAGCATCGGGCACCACCTTGGCAAGCTGGGTGAGGAAGGAAAGATCGGCCACAGAGTTATTGACCTTACCAGGCCAGAGGATCTTGATGGAGGCGCTGGATCTACCGAGGCGCGAGTCTTCAGGGAAGCCCGAGGAAGGAACAACAACGAGCCCCACATTAAAAGGCCAATGAATGCATTCATGGTGTGGGCCAAGGATGAGCGGCGCAAGATCCTCCAGGCCTTCCCCGATATGCACAACTCTAACATAAGCAAGATTTTGGGTTCTCGGTGGAAGTCCATGACTAACCAGGACAAGCAGCCATACTATGAGGAGCAGGCCCGTCTGAGTAAGCAACACCTAGAGAAGTACCCAAACTACAAGTACAAGCCACGGCCTAAGAGAACCTGCATTATCGACggaaaaaaactccgcattggAGAGTACAAGCAGATGATGCGCTCACGGCGACAAGAGATGAGGCAGTTCTTCACTGTGGGACAGCCACCACAAATTCCCATCACCACCAGCGCCAGTATGGTCTATCCTGGGGCCATCACCATGGCGACCACCACACCCTCACCTCAGATGACATCAGAGTGCTCGAGTGCCTCAGCGAGCCCCGAGCCATCCATTCCTGTCATTCAGAGCACCTACAACATGAAGCTAGAGCCCAACACCATGGCAAACAACAGTGTGCCGGTCAATGGCGAGGATGAGATGGACATGTACGAGGATTTTGAGGATGAGCCCAAATCAGACTATAGTAGTGAAAATGACGCACAAGAGCCAGTCAGCGCCAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39240 lncRNA upstream 95761 24226851 ~ 24227916 (+) True G29535
TU39145 lncRNA upstream 172922 24150510 ~ 24150755 (+) True G29477
TU39118 lncRNA upstream 361345 23960107 ~ 23962332 (+) True G29460
TU39096 lncRNA upstream 444235 23816706 ~ 23879442 (+) True G29441
TU39092 lncRNA upstream 579788 23742705 ~ 23743889 (+) True G29438
TU39280 lncRNA downstream 302 24450958 ~ 24454877 (+) False sox6
TU39278 lncRNA downstream 718 24451374 ~ 24455669 (+) False sox6
TU39279 lncRNA downstream 4577 24455233 ~ 24455669 (+) False sox6
TU39281 lncRNA downstream 4577 24455233 ~ 24455688 (+) False sox6
TU39299 lncRNA downstream 152326 24602982 ~ 24605198 (+) True G29579
XM_039795243.1 mRNA upstream 9032 24235725 ~ 24314645 (+) False plekha7b
XM_039795875.1 mRNA downstream 166900 24617556 ~ 24621883 (+) True LOC120556334
XM_039794995.1 mRNA downstream 237370 24688026 ~ 24700170 (+) True copb1
XM_039794996.1 mRNA downstream 252201 24702857 ~ 24737053 (+) True rras2
XM_039795639.1 mRNA downstream 287972 24738628 ~ 24787768 (+) False tub
XM_039795640.1 mRNA downstream 287972 24738628 ~ 24787768 (+) False tub
XR_005638781.1 other upstream 14398 24235724 ~ 24309279 (+) False plekha7b
TU39086 other upstream 591971 23727012 ~ 23731706 (+) True G29433
TU38916 other upstream 1186650 23136732 ~ 23137027 (+) True G29292
TU38851 other upstream 1331175 22992137 ~ 22992502 (+) False LOC120555548
TU38802 other upstream 1442311 22867720 ~ 22881366 (+) False ankrd11
TU39283 other downstream 656 24451312 ~ 24454877 (+) False sox6
TU39277 other downstream 718 24451374 ~ 24454877 (+) False sox6
XR_005638876.1 other downstream 1514023 25964679 ~ 25964758 (+) True LOC120556589
XR_005638875.1 other downstream 1515521 25966177 ~ 25966255 (+) True LOC120556588
TU40247 other downstream 3015122 27465778 ~ 27467021 (+) True G30295

Expression Profile