RNA id: XM_039794426.1


Basic Information

Item Value
RNA id XM_039794426.1
length 8131
RNA type mRNA
GC content 0.43
exon number 13
gene id nfat5b
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 25883454 ~ 25927726 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTCCTCCACTCATCAGAGTCCAAAAGTCATGAGTCAAAAGAGCGGCGGAGAGGCAGGGCCTCCCCCTTCAGCTGCTCTAGCATCAGGAAGTTCCCTCTGAAGCAGGGAGTGTCTGCATATAAATGGTCTGCAGTTCTCTGCTTCATAGATGCCATGTCCTCCTCTATGACCATGGAAGGCCCCCGAAGTGCTTTTCCCAACTCGTCCAGCCCCACCATGCATTCCAGTGCTTCAGCCAGTGCACAGAAACCAGTTCACAGCGCCAATGTTGACCTGGAGGACACCAGGAGTAGCAGAGTGGTTCCAGAGGTTGTCGGAGCAGAAGGTGGGAATGGTAAATGCAGCAGGGGCAGCAGTGAGctaggaggaggaagaggcatAACATCCCAGGAGGCCCAGCCACATCACCAGATGACCCCATCTAAGCGCCGCACCATACTGAACATCTCTCCACCTCCACAAGACCTATTTGATGACAGCCAGATGTCCTGCCAGGATGAAACATCCCTGGACTCAGAGCAGAGTAACAGCATCTGGATGGAAGACTCTCTCTCCAACTTCAGTATCATGAGCACCATCTCTTACAATGACAACACAGAGGTGCCACGGAAGTCCCGCAAACGTACCCCTCGGCAAAGGCCTGGTCCTAAGTCTGTGCCTGCAGGAGAAGCCAGTATGGACGTGTTTGATGCAGACAGTGCCAAAGGTCCACACTTTGTCCTGTCACAGCTAGGTCCGGACAACAAGACTGGATCAAAAGGAAGCTCTGATGATCCTCAGAAAACTAACCAGAAAGGAGGAACTCTATCGATGCAATACCCACAGAAGAGTGAGGGGAAGGAGGTGAAGATCCTCGTCCAGCCTGAGACTCAGCACCGAGCCCGCTATCTGACTGAAGGCAGCAGAGGGTCAGTGAAGGACCGCACTCAGCAGGGCTTCCCTACTGTAAAGCTGGAGGGAGTAAATGAGCCAGTGGTTTTGCAGGTGTTTGTGGGCAACGACACTGGGCGTGTTAAGCCTCATGGTTTTTACCAAGCTTGCAGGGTGACCGGCCGCAACACCACAGCCTGCAAAGAGGTGGACATAGATGGCACAACTGTCATCGAGGTGTACCTTGATCCAAGCACCAACATGACACTAGCGGTGGACTGTGTTGGGATCTTGAAGCTCCGTAATGCCGATGTCGAGGCTCGCATCGGTGTGGCTGGATCGAAGAAGAAGAGCACACGCGCTCGGCTGGTGTTTCGGGTAAACATCCCCCGTCCAGATGGATCAGTGCTCACACTACAGACTCCATCATCTCCAATCCTGTGTACTCAGCCTGCAGGAGTGCCTGAAATCCTGAAGAAGTCACTACACAGCTGTTCAGTGAGGGGTGGAGAAGAGGTCTTTATCATTGGCAAAAACTTTCTTAAAGACACCAAAGTTATATTTCAGGAGAATGTCTCTGATGATAAATCGTGGAAGGCGGAGGCTGAAATTGACAAAGAGCTGTTTCACCAGAATCACTTGATAGTGAAGGTTCCTCCGTACCAgaaccaagccatcacctcttCAGTGTGTGTGGGAATCTATGTGGTGACGAATGCTGGGAGATCCCATGATGTTCAGCCTTTTACCTACACACCAGATTCAGCAAAAACTGATGTTCCTGTGAAGAAAGAGGCGCCTTCTCCAGTGAAGACTTGCTCATTTGAAGAACAAATTAAAGTTCTAGATGCTGCCTTGATGCCTTCCATGTTGCCTTTAGTGAAGAGAGAAGATGTCACTCCGATGGAGGTCACCAGTAACCTCCAATCTTCTGGTGTATTTAAGcAGACTGGTGACCTGTGTCCAGCCCAGCAGAACCCAGACATGACTGCAGGACATCTAAATGAAAACAGACCATTCTCCAACAACCTGTCTCAGGCTGCAGGTGACCCTGACAAAGGCCAGGCACCTGTTTTTCTCAACACAGAGCCCTTAAGCACTATCCAGAAGCAGGACATGGCAGCCGCCAGCTCTTTCTCGGTGCCTGCTGACTCACTGCTCCAGCAGGGATCACAGCAGTTCCTTCTGGAGCCTAGGGAAGGCCTCGGACAGGAGAGGCCCGGCAGTGGCTCTGGAGCTGTGGGGAGGCTGTGTGGAGAACCTGCGCCACAACAGCAGCAATTGCCGCTGTTCCCCCCAGATGAAGTAGCCCAGCTGGAGGAGGCAGTGAGGCAACTTAAAGCCAAAGGGTTCTGTAACTTACCACTTCAGTCTGACAACTCAATGGCCaaacaccagcaacaacacatgcagcaccaacaacagatCCAAAAACAGCAAATTCAGCAGCAACACATTCAGCAACAACAgctgcaacagcagcagcaacagcagcaggttTTGGAGAATTTACAGCAGCAGCTGTTTCAGTCACAGATTCAAATGCAGTGTGGCATGTTTCAGGATGCCCCTCAGGCCAAGAACGCAGAGCAGGGCTCATCACAAGGAGTGGTGCCAAACCAGGGGACTCTTTTCCAACAGgcccaacagcagcagcagcatcaacaacagcagcagcaacaagcaGCTCTATTTCAGCAGGCGAGTGATCTGCTCTCTATTCAGACCAACTTCCTCCAGCAGACCCCCTCACACCCTTCACCACCCATGTTCCACAATCCCAGTTCTTTGGCTGAAACACAAGATCCACAAGGTGGGTTGTTTCAGGAAGCCTCTCAGGAGCAGGTCCAGGCTGCTCTCTTCCAAAATACCATGACAGTACTACAGTCTCCGGACCAACGGCCCTCAACCCCGGGACTTTTCCTCCCTCAGTCATCCCTCCCCTCTCAGCTCACAACCAGTAGTGctcagcaacaacagcaacaacaacaacaacaacagcagcagcagcagcagcagctggccTTCCTTAGTGCTCTACAAACACCTGCCCCTGAACCACAGTCAGTATTTCAGGCTCAGACACAGCTGTCCCCCATCCAACAAAGAAGCCCcatggagcagcagcagccctcCCAGCCTCAGCCCCACACACAGCCGGCCCAGCAGGCTTCCCTGTTTCAGAACATCTCCCCACATCCATCTGCCAACACACTCTCTCCaggccagcagcagcaacagcaggctGGCCTTCTGTTCTGCAACAACCCCCTGTCCACTCCGGATCAGGCCTCCAACCTCCTGTTCAGCAGCCAGGGCCAGATGCCACCGCTGACCAGCAGCAGTCTAGTTTCCCAAGAGCCCCAAAACCCGTCTCTGCTCTTTTCCCAGGCCAGCATGGTGACAGTAAACCAGCAGGATCGCTCTGAGCCCATGGCCTTAGGGAACCCCACCGATCAACAACAGCAAGTCATGTTTCAGGAGCAACAGCCAATGCAGCTGGGCAGCAGCTCAAACAACCGGCAGGAGCAGCCTGTGGGCCTCTTTATGCCTCAGTCTAACATGGCCTCCCTGCAGGGGGGGCTGGCAGCTCAGGAGCTCGCACAGTCAGCCATGTTTGTCTCTCAGAACGGCGTGGCAAACCACCAGACGACCACCTCCTCTCCTGTTCAACAGCCAGGGACTCTGTTTCAGACCGCTGTCAGTGGGAGCATTAATCAGCCCAGTCAGCCTCAACAACCTGGCCTCTTCCTTTTTGGGATTGAGAACGAATGTGGCCAGCTGATGAACACTCCTGGAAACACGCTGTCGGATCAGATTATTGCCATCAGCCAATCTGGTCAGAACCAAAGAGAGAGTGATGCACACATCCAGTCCCTGCTCAGCCAGTCCCTGTCTCAGTCTGGGCCTGTGCAGAACAGCATGAGTGCCTCTCAAAATATGGAGAAAATTGATGACCTGCTGGTCAGTCTGCAGGACTCAGGCAGCAACTTAACCCGTTCATACTAACTTTTATGCAGGTTCACggattgtcttttatttttaacaggtggaataattgtaaaatgtagacaaaaaagtctaaatattGTCTGTTAATAAGCCCATGCAGCAAAAGatttgtaaatttgtctcgCATCATGAAGTTTGAGACAACATAAGTCTCTTCCTCCTCATGAATATTCTCCAGAGTTGCATGGATGATATCTGTTATCTCGTTATTAAGGACAAACTTGACAAATTAATATCCAGACAGTGAACCAGGAATTTGATTTGGAATTTCTTGGCTGAGTGGGCTGGCCGAGAAAGCGAATGTCTCCTTTTAACTTTATGACTGACTGACTCCCCATTGTAACAAACGTGCAAAATTAGATAGGCTCCAGGCAAGAACAGATAACTTGTCATTACTGTTCTTTGAGAAAAGCAGCATTTGGTGCTTTCCTTCAACTTTTCCTCTGAAAGAACAGTAGCTTAGTGGTCTTGTTACTCATTAACTTGTGAagttgtgtgtgcatctgtagaTATATAGTCAGTGATTTTATCTGCAGCGTCTTTCGGTTCTCGTGGTGTTTTCTAAAGTGTTCTCCAGAGTGTTTAGTGGTTTCCATGAATCGTGTTCCCTTTAATAttcttttgcatttttgttgcGTGGAAGGCGGAGTGTGCGGTGTAGCAGGAAGGTTTAGAGAAACTGCGGTATGTATGGTTGAAGACATCCAAGATGTGGAAGGTAGCCGCTGTTGACGtggtttaaaattattttcacCCAACAGTGCAGGAAGTGTATTGAAAGAAAGTTAGCGGGTTAAAGATGAGGCAGAGAAATGAGAGGTAGAAGAAAAGTAGGAAAATCTGATGTGTAGTCACAAACAAGCGTCTTTATTCTATATGTGCTGATTATATAAATGTTGTAGCAGCCAGTAATATACATATATTCACTCAAGCTGTCTCTGGAAGCCCACAAAgtatattttaattaataatatgTCATAGAAGGAAACAGTGCTCAGTAGGTGTAttactaatgtaatgtaattagtAATGTGGCATTTTGTTGCCTGGCTAAATTAGATCGAGTCTTGTCTAGACCTGTTTGGTGCAGTAATACCTGTAAAAGAATATTTTAGCTGTCGGTGTGGCAGTGCAGTGAAGATGGTCACCTCCAGCTGTGAAACATATCTTTCAGTACAAGATACTTTAACATCTCCACCACAGTGTACAGATAGCACTTTATGATATCAGTAAGCAAACATGTTCCGGCTAACATTTAGTCTGTATTCATCAAATCCAAACTATGTCAGtttggtacttttttttttttttttaaataacagatTCTCCTTTTAATTCATTAAAGGGGTGAATCTTTTAAGAAAGTGTGGCGGtagaaaaataacaaatattggCGAAGGCTTTTACATTCAGCACTTTATGATGCTGTTCTTTGTGACCACTTTACTCATCGAGGGTACAGTACAGTCCCACAAGAGGTGGTGGGTTGTTTGTTCAGCCGCCTCTTTCTCATTGTTTACAGTGAAGAagatactcttttttttttttttttttttttaaacattctgtTACAACTATCAACTATTCATTCCCAAAAcctaatacattatttattccTGAAAACCAGCTAAGAAATCTGGAGAAATGAGTTAGCTAGTTAAATCGAGACGATCGAGTCGTTTTTATTCAGTTGATATCATTTCAGTTGACATATACCTCTTATTCAAACACATCTACAGTAGAGGGAGTAGAAtgtaatgttattattattatgattattatgtgTTTTAGTGTCATAATTCTGCGTCAGGCACGCATGAAGTGGAATAGTATTCTTAAACAAGCTAGAGAaaagccttttttgtttttaccagTTTTAGTAATGTTATGGATTTAGTGAATGTTGAGGAGAAGCAACTGTTTGCTGGCTCAACTGTACACAACATTATACATCTCATCCAGCAGTTGGCTAGTGGCCTCAGGACCAAAGTTTGACTCAAATCTTGCTTTGCATAAATCCTGATGACAGGCCAGTTTTATGGCTCATAagcttttatttcctttttttaaaagaaacataGATGATTTCATTATAACGATGCCCTGCTGccacatttttctttcttttcggttgttgtgaattttttttttggcaaaaaactgtatttgtgtcatgtttagttttACTGTAAGTGTAAGCATGAACAAGGGGCTGGTCTCTGATGATGACAGAATTAGCTCCCGTTTTATGCCTCAGTCGTTGTTCTTGATTTGTTTATTAGAAACACAAAACAGCTTTACATTTTATACACTTTTAAGTCAGAAACAGCTATTATTTTATGATGGAGATTATGTTAACTTGGCTAATGTGATTTCAGTCACTACGGCGTGTCAGTTTGAGTGGTTGTGAGTGTTTTTTAAAGGGACCCTACTCCTGAAGGAAACCTGACTTTGGAGAAAAGAGCTACCTGGGATTGGCTTTCTTCAAATTGTGAAATAGAAGAACTAAAATTTCCAGTGTTGAGTATTTatgattttatttgtttttgtttattttaagtttagattttttttttttttttttttctgtgtagtACATGTGCCTCTCTTCGGAGAagcatatttaatttatttgtgtgttgtttattaTCTAAATAGTTTCACGTAATCAGCTATGTTCAGATATATTCTAACTAGATTGATGACAGCAATGTGATCTGGCGCCCCCCCACACCTGCTGATACTAGCACCTTgtgatgatggtggtgatgCCTTTAAAAGAGACCGTAAAGTGATTTGTACACTATGAATATTATGCGCATTGCTGTGCACAGTTAGTGTTTTGTTATAATATAAGCCTGCATGTACATATCATGTGGTTGTTCAAGGCTAATAATTGAATTGCTGGCCCTGTATTCCTTTTTTACCAAATAGTTGAACATTCAAACagcttttaattaaaaattagAAATCCTTCAAAGCAGGGCCAACAAATGTCAGTGTTTTTACtataaatatatagaactgAATGTGATTATACAGCATGGCTGTAAATGTGTCACTTGGATCCAAAATGCTCTTTTATACACATACTGGGGAggtaattactttttttgaaattACAGTTTCCTCATTTGTGTGTTTCCAATGTAACTGGAGATCAGAAATATGTAAAAGCGTGACTCATTATACAGTCACTACTAACTGTATGGAAAAGGTTCTCATATttcctacagactacagactctaaCTGTCTCTATTTCTTGCAATAGAACAAGtggttttcttttaatattacccattaatttaatgtcaacaaaTTAAATCTGCTGTCACAGGTGTTATTTTTGTTCCTAAAATGTCACTTTAGACACCAATAGAAAATGTACATGTGCCTCGAGGAGATGTTGTAGTAGCGACCAGATGGATGTTTTACCATTGTTGCCTGTTGAATACCCCTGGTTCTGCCAGTGATGATTAGTCCTCATTAACTAGAATGTTTTAAGCCAAAAGactttaaatgtactttaaatgcTCAACAACAGTGACCAGATAAATGTGGTTGTGTTTGATAAATGTGTTGTGCAATTTCTGTCATGCATCTAACTAGTTTGTACTGAAGTATCCATTGCATTTATGTTATACAACGTAGATGCAGACACATTTTCCCTGAAACTGCTATGCAgctaatatactgtaaatgtagatCTGTtagtttttgaatatatatttttctaaacAGCATAAAGTAGAAACCAAAGTAGATGTTCTTTCTATTATTTATGTTGCTTGTTGAAATATTTTCTGATGCTTTGAGTGCCGCCTGAAACcgatttttaatcttttaatcagtttttaaaaaaatgcaaatttcTCAATGCATGCTAGAACAGTTTTGTCCTATACTGTAATTTTAGAGCAATTACAAATTCTGcaaaacatacattttcatgTAATTTGTTCTAAGTctggtattattattttcctaAATCCATTCTCAACATTTCTGTTACATCTTTAACTGTCACTCTTTTAGTAAACCGCATATTTTTAGTCCTGGAAACAGCAAGGGGGAATGttttcatatatattttttctaacCATGTGAACAACTGTCAAATTATTACCCTTTGGGGAGAGGGACCTTTCTtcatattttgctttttttggggattttttcaATCTTTTGCAATTCCGTTTCTGTAAACTTGCTGCTATCTATATTAAACATATATACTTTAAATGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39742 lncRNA upstream 46777 25861728 ~ 25862391 (+) True G29915
TU39724 lncRNA upstream 52358 25855839 ~ 25856810 (+) False pkd1l2a
TU39673 lncRNA upstream 221060 25685840 ~ 25688108 (+) True G29868
TU39650 lncRNA upstream 272043 25624948 ~ 25637125 (+) True G29851
TU39644 lncRNA upstream 286716 25622189 ~ 25622452 (+) True G29849
TU39760 lncRNA downstream 2021 25929747 ~ 25929973 (+) True G29922
TU39815 lncRNA downstream 77537 26005263 ~ 26006950 (+) True G29964
TU39828 lncRNA downstream 130202 26057928 ~ 26059434 (+) True G29974
TU39830 lncRNA downstream 133465 26061191 ~ 26063421 (+) True G29975
TU39861 lncRNA downstream 190439 26118165 ~ 26118521 (+) True G30003
XM_039794431.1 mRNA upstream 25808 25856769 ~ 25883360 (+) True pkd1l2a
XM_039794803.1 mRNA upstream 98664 25805445 ~ 25810504 (+) True dkk3a
XM_039795594.1 mRNA upstream 258555 25639531 ~ 25650613 (+) False btbd10b
XM_039795652.1 mRNA downstream 3550 25931276 ~ 25942831 (+) True kars1
XM_039795653.1 mRNA downstream 3552 25931278 ~ 25942831 (+) False kars1
XM_039794810.1 mRNA downstream 26072 25953798 ~ 25957807 (+) True gcshb
XM_039794811.1 mRNA downstream 33192 25960918 ~ 25966638 (+) True rpl13
XM_039794812.1 mRNA downstream 44207 25971933 ~ 26003635 (+) True cpne7
TU39283 other upstream 1454291 24451312 ~ 24454877 (+) False sox6
TU39277 other upstream 1454291 24451374 ~ 24454877 (+) False sox6
XR_005638781.1 other upstream 1599889 24235724 ~ 24309279 (+) False plekha7b
TU39086 other upstream 2177462 23727012 ~ 23731706 (+) True G29433
TU38916 other upstream 2772141 23136732 ~ 23137027 (+) True G29292
XR_005638876.1 other downstream 36953 25964679 ~ 25964758 (+) True LOC120556589
XR_005638875.1 other downstream 38451 25966177 ~ 25966255 (+) True LOC120556588
TU40247 other downstream 1538052 27465778 ~ 27467021 (+) True G30295
TU40331 other downstream 1547429 27475155 ~ 27486736 (+) False ogfod1
TU40340 other downstream 1559951 27487677 ~ 27488791 (+) True G30366

Expression Profile