RNA id: TCONS_00073392



Basic Information


Item Value
RNA id TCONS_00073392
length 1299
lncRNA type lincRNA
GC content 0.41
exon number 2
gene id XLOC_037294
representative True

Chromosome Information


Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34822849 ~ 34828098 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ctacaaaatttcaacaaaatatttcttttttttttttgcttttattaatttttcctaataatatttttctataacataaactTGGGTGTACTCGTTTTTGGACCTTTATCGTAAGTTATGTTAaacaagctccagatttggcttcagcactgactaatctaatgtatatgcacaaatataagattgtatagcttcctattaaaaatatgaatttaaaagatagatttgtgaggggtgtacttaaacatatatgctgagcattgtacaTATACTGCCATTTTTGTATGCCTTCATTGGACAAAACAACTTATTTTactatgttttatattatattctgCCAGCACAGCCTACATCATAGTGCCTAACCAGGGGTCAGGGCTCAGAACTGAAAGCAGATCGGCTAAGTAATTGCCTGTAACTCAGGTGTTAGGGGAATGTGCTGGTCAAAGGtcagagtttttgtttttttgctgaacagaaaaaaaaaatggccacCAAACTGCATTTCAATTGACAACTCATTATAATCTCTCCAAACGCCTGTCACTCTTCCCTGTCCAGATTCCCCAAATCCCTGGCCTTCCTTGCTCGACCATGTCCACAAATGAAAGGGAAGAGGACCACACAGGAACCAACGACGACGCCGTGTCACTGTTCAAAACAGACACCCCTGTAAACACAACACATGCTTCACATGGGCTGATCGTTGCAGTTTCACGCTTATCAAAAATAAGCATCGGGCTGGATGCACCTCTCGCCGCTACCTTCGCAGAATCTCAAGTATCTTATGCAAACTGTGTGCGTTTGTTGGGGAGCTCTGGCAGCGACTGATGAGTGTCTCATTATCTCCACACCAGCCGTACACAGTAAGAAGAGCATAATCAAAGCCTGGGGGATATTTCAATTTGATGCTCAACAAGCTGAGCCTGAGATTAAAGGATCATACGTGTCATCCACACAAACATCACTTCCAGAGCAGGCGAGCGTACGTGAGCTCAGCTTTTCCAAGAGAGAGGCGTCACCGCCGCAGACGACGCAGTCGCACTTCTgtctccctgtgtgtgtgtgtgtgtgcaactgAAGGCTGATGCGATGCTTCTCACATGTTTGAGATGTCGAGGAAGGAGTCTTTCCTttttttacatgtgtgtgtgtgtgtgtgtgtgtgtgtgtacgtgtgacGAATTTtgcttttaagaaatatttatgaGCCGGTAcccttcttaaaaaaaaaaaaaaaggaaaaaaagaaagcgTTGTCTTTAATGAACATGTTTTAGAGATTGTTTCAGCATCTAT

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194390

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00073382 lncRNA upstream 407112 34416401 ~ 34419553 (+) False XLOC_037290
TCONS_00075165 lncRNA upstream 435512 34390451 ~ 34391153 (+) True XLOC_037289
TCONS_00074930 lncRNA upstream 448862 34375528 ~ 34377803 (+) True XLOC_037287
TCONS_00074929 lncRNA upstream 450255 34373486 ~ 34376410 (+) False XLOC_037287
TCONS_00074928 lncRNA upstream 452233 34373475 ~ 34374432 (+) False XLOC_037287
TCONS_00073393 lncRNA downstream 122844 34950942 ~ 34959774 (+) False XLOC_037295
TCONS_00075166 lncRNA downstream 142745 34970843 ~ 34973324 (+) True XLOC_037297
TCONS_00073399 lncRNA downstream 177993 35006091 ~ 35010396 (+) True XLOC_037298
TCONS_00073406 lncRNA downstream 198206 35026304 ~ 35030107 (+) True XLOC_037299
TCONS_00075167 lncRNA downstream 249452 35077550 ~ 35081996 (+) False XLOC_037300
TCONS_00073389 mRNA upstream 178970 34641237 ~ 34647695 (+) True XLOC_037292
TCONS_00073387 mRNA upstream 343967 34433053 ~ 34482698 (+) False XLOC_037291
TCONS_00073388 mRNA upstream 349112 34434943 ~ 34477553 (+) True XLOC_037291
TCONS_00073384 mRNA upstream 397090 34425736 ~ 34429575 (+) False XLOC_037290
TCONS_00073381 mRNA upstream 402666 34397843 ~ 34423999 (+) False XLOC_037290
TCONS_00073394 mRNA downstream 122844 34950942 ~ 34968429 (+) False XLOC_037295
TCONS_00073395 mRNA downstream 124105 34952203 ~ 34962725 (+) False XLOC_037295
TCONS_00073396 mRNA downstream 124171 34952269 ~ 34962969 (+) True XLOC_037295
TCONS_00073398 mRNA downstream 168147 34996245 ~ 35009747 (+) False XLOC_037298
TCONS_00073400 mRNA downstream 186415 35014513 ~ 35025517 (+) False XLOC_037299
TCONS_00073390 other upstream 35778 34790750 ~ 34790887 (+) True XLOC_037293
TCONS_00073386 other upstream 397445 34426291 ~ 34429220 (+) True XLOC_037290
TCONS_00073385 other upstream 397545 34425775 ~ 34429120 (+) False XLOC_037290
TCONS_00073383 other upstream 397553 34425728 ~ 34429112 (+) False XLOC_037290
TCONS_00073362 other upstream 990195 33810446 ~ 33836470 (+) True XLOC_037278
TCONS_00073397 other downstream 141352 34969450 ~ 34969567 (+) True XLOC_037296
TCONS_00073405 other downstream 189749 35017847 ~ 35022314 (+) False XLOC_037299
TCONS_00073409 other downstream 601104 35429202 ~ 35429316 (+) True XLOC_037302
TCONS_00073415 other downstream 1033986 35862084 ~ 35863842 (+) True XLOC_037304
TCONS_00073420 other downstream 1966286 36794384 ~ 36795322 (+) False XLOC_037311

Expression Profile


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