RNA id: TCONS_00008421



Basic Information


Item Value
RNA id TCONS_00008421
length 328
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id XLOC_003671
representative True

Chromosome Information


Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40891681 ~ 40956123 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CTTGTCTGAGATAGTATGATGTGAATGAGCTCCGTGATAAATGGTTAAAATATAGTCGATTGGGATAAAATGTTTGTTCATATCAGTGGATTACAATTTTTGATAATGGATTGAGTCCAATTGTGTCCTTGTTAAGCATTATCTTTCAGTATAAAAACAGAGaactgagtgtgtgtctgtgcggtGTTTATCACTGTCCTTAATAAACTGCAGGTATGTAATGGTAACAAAATAATAACTACCATACGATCCAATTTCTATGTGATGATAGACTGAAataaatttctttattttcaaTGCATGAGATTCTATGTAGAAATATATAAAG

Function


GO:

id name namespace
GO:0000003 reproduction biological_process
GO:0022402 cell cycle process biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:0022414 reproductive process biological_process
GO:0048285 organelle fission biological_process
GO:0007049 cell cycle biological_process
GO:0007059 chromosome segregation biological_process
GO:0051301 cell division biological_process
GO:0000280 nuclear division biological_process
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00008676 lncRNA upstream 16100 40891681 ~ 40932395 (+) False XLOC_003671
TCONS_00008678 lncRNA upstream 16100 40902118 ~ 40932395 (+) False XLOC_003671
TCONS_00008680 lncRNA upstream 16100 40904324 ~ 40932395 (+) False XLOC_003671
TCONS_00007132 lncRNA upstream 43295 40895694 ~ 40905200 (+) False XLOC_003671
TCONS_00007133 lncRNA upstream 48606 40897326 ~ 40899889 (+) True XLOC_003672
TCONS_00007140 lncRNA downstream 243224 41192329 ~ 41201272 (+) False XLOC_003676
TCONS_00007141 lncRNA downstream 246289 41195394 ~ 41201272 (+) True XLOC_003676
TCONS_00007142 lncRNA downstream 274380 41223485 ~ 41235090 (+) True XLOC_003677
TCONS_00008422 lncRNA downstream 510743 41459848 ~ 41473741 (+) True XLOC_003679
TCONS_00008683 lncRNA downstream 983995 41933100 ~ 41934619 (+) True XLOC_003684
TCONS_00007129 mRNA upstream 100880 40812590 ~ 40847615 (+) False XLOC_003668
TCONS_00007130 mRNA upstream 104469 40831620 ~ 40844026 (+) True XLOC_003668
TCONS_00007125 mRNA upstream 274425 40649412 ~ 40674070 (+) False XLOC_003667
TCONS_00007126 mRNA upstream 274425 40649413 ~ 40674070 (+) False XLOC_003667
TCONS_00007128 mRNA upstream 285257 40657612 ~ 40663238 (+) True XLOC_003667
TCONS_00007134 mRNA downstream 115717 41064822 ~ 41067789 (+) True XLOC_003673
TCONS_00007135 mRNA downstream 140469 41089574 ~ 41104643 (+) False XLOC_003674
TCONS_00007136 mRNA downstream 141335 41090440 ~ 41105632 (+) True XLOC_003674
TCONS_00007138 mRNA downstream 185950 41135055 ~ 41157954 (+) False XLOC_003675
TCONS_00007143 mRNA downstream 293539 41242644 ~ 41372948 (+) False XLOC_003678
TCONS_00007131 other upstream 59201 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007127 other upstream 292624 40649471 ~ 40655871 (+) False XLOC_003667
TCONS_00007097 other upstream 2144757 38803611 ~ 38803738 (+) True XLOC_003642
TCONS_00007094 other upstream 2359929 38588451 ~ 38588566 (+) True XLOC_003640
TCONS_00007082 other upstream 3298467 37647553 ~ 37650028 (+) True XLOC_003630
TCONS_00007137 other downstream 161564 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other downstream 186504 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007149 other downstream 516002 41465107 ~ 41465236 (+) True XLOC_003680
TCONS_00007172 other downstream 1676266 42625371 ~ 42625487 (+) True XLOC_003703
TCONS_00007182 other downstream 2095721 43044826 ~ 43044949 (+) True XLOC_003709

Expression Profile


Expression of TCONS_00008421 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.
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Expression of TCONS_00008421 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.