RNA id: TU40639


Basic Information

Item Value
RNA id TU40639
length 1012
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G30579
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 28011000 ~ 28019075 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttttccttaaagttaactacaggtgtgaaagtgACCTCAAAGTGAGGTCATATTCTACTCTCGAGATGGCTGGGTCCTGGTTTGCCTGTGAAGAACTTTACCGTGCAGTGGGGGTGTCTTGCCTTCTTGGGGACCATCTTCTTCCTCTCCACGATCAAAGGGATTGAGGCGAGTTTGGCGGAAAAGTGCAAGTCTCTCATCATACTCCATTTCATCGGCTACATCTTCAACTTTTCCTTGTCCCTGGTTCTTGTTACCAAAAGGCTGTGATGTGATATGACATAAAAACTATATGATTTACATTATGCTAGTGTTTTTAGGATGCATGTCAATTAAAATGGCATAAAAATATAAACCACAGCACCCATATGAAAAGTAATGTGCTCTATTCAGACAATATCAACACTGTCACTTAGCAGGCTGTAAAGATGGTTAGCAGGAAGTGTTGTCTTAATAATCCAAATACAAACATTTAATCCactatttatcacttttttttatcatacaTCGTTTTATCATCGATCTCAGTAGATGGGGTCAAACAAGAAAACACTGCAAAGCCTAGCCTCACCGGCTGTAACCAATCAGGGCTGTTGTTGACAGTAAAGCGGACACCTTTTTGTTTGGAGTAGCTAATACTGCTCAACATGTTTTTAACATAATTAATCACAGCTATGCtaccaatataaaaaaaaaaggcacatcaACATCAATGCACAAATGTCAACaggcagctaacgttagctagttagttagttagctagctagctaactacctttaaatacaaaacaatcaTCTGCTTggatgctaatgttagctagctaatttaACATGTCGGTCTGGTCAGAAGCTTACCCCGTTTTCGACCTTATTATTACATTAGGTACTGGGCAGCTGTAAAATATGTTTAGTTTGTGGTTAAAAGAAACAGTTCTTCccgtgttgttgtttttttctctgccATCAGCAAGGGCATCACAAAGCAAAAAGCGTCAAGTCATTTTAAAGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40632 lncRNA downstream 9572 28001197 ~ 28001428 (-) True G30576
TU40602 lncRNA downstream 53376 27956247 ~ 27957624 (-) True G30551
TU40564 lncRNA downstream 112615 27897943 ~ 27898385 (-) True G30519
TU40562 lncRNA downstream 115159 27895529 ~ 27895841 (-) True G30517
TU40535 lncRNA downstream 172304 27828370 ~ 27838696 (-) False LOC120556451
TU40650 lncRNA upstream 24511 28037134 ~ 28038207 (-) True G30586
TU40658 lncRNA upstream 34136 28046759 ~ 28059168 (-) True dbndd1
TU40708 lncRNA upstream 212470 28225093 ~ 28225447 (-) True G30634
TU40721 lncRNA upstream 330077 28342700 ~ 28392518 (-) True G30644
TU40758 lncRNA upstream 435333 28447956 ~ 28550000 (-) True LOC120555801
XM_039795623.1 mRNA downstream 139743 27863663 ~ 27871257 (-) True LOC120556190
XM_039795622.1 mRNA downstream 155413 27841587 ~ 27855587 (-) True kif7
XM_039795011.1 mRNA downstream 356592 27650685 ~ 27654408 (-) False si:ch211-122f10.4
XM_039795010.1 mRNA downstream 356594 27649504 ~ 27654406 (-) True si:ch211-122f10.4
XM_039795518.1 mRNA downstream 464475 27541636 ~ 27546525 (-) True gfod2
XM_039794314.1 mRNA upstream 36728 28049351 ~ 28073479 (-) False dbndd1
XM_039794313.1 mRNA upstream 36728 28049351 ~ 28073475 (-) False dbndd1
XM_039795268.1 mRNA upstream 80435 28093058 ~ 28097147 (-) True foxf1
XM_039796242.1 mRNA upstream 186487 28199110 ~ 28203878 (-) True irf8
XM_039795569.1 mRNA upstream 193103 28205726 ~ 28224206 (-) True dusp22a
TU40633 other downstream 8530 28001640 ~ 28002470 (-) True G30577
unassigned_transcript_142 other downstream 130787 27880131 ~ 27880213 (-) True trnal-uaa_2
TU40500 other downstream 239190 27766831 ~ 27771810 (-) True G30465
TU40446 other downstream 377378 27626893 ~ 27633622 (-) True G30422
TU40273 other downstream 694842 27310171 ~ 27316158 (-) True G30319
TU40786 other upstream 656568 28669191 ~ 28669868 (-) True G30693
XR_005638770.1 other upstream 757378 28770001 ~ 28846965 (-) False mafa
XR_005638769.1 other upstream 757378 28770001 ~ 28846965 (-) True mafa
XR_005638771.1 other upstream 763352 28775975 ~ 28846965 (-) False mafa
TU40901 other upstream 1245355 29257978 ~ 29269164 (-) False LOC120555471

Expression Profile