RNA id: XM_039794314.1


Basic Information

Item Value
RNA id XM_039794314.1
length 2138
RNA type mRNA
GC content 0.45
exon number 4
gene id dbndd1
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 28046759 ~ 28073479 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTACATACCAAGCCAAGCCTCACAATGCTGCATTTACTAAAACAAGTGGCTTAGCCATTTGCAGTGATGTCGCTGTTCCCAGACCTCCCTCTCGGTGGTGGAGTCGCTCAGTGAGGCAGTGCAGCACTCAGACAGCTCTGATGGTAGAGCGGGGCAGGTGGACTGAGTGAGAGGAGAAACCAACATCACCTGTTTGGGAAATCTAGAACAACGGAGGACGAAAAAAGGAGGAGCAGAGTCTTTGGAGAGCTGAGGTCTCGCTGTGTCTACCCACCCACTCACCCACCCCACCCTAGTCTCTCTCAtatgcacagacacactctcCCCTTGCCTCTCCCTTCTTCCCTCCCTGTTTGTCTCCTCCACTCTCCGATGCTGGTGTGAACAGCAGGACACTCTCGGCTGAGCTGCATGGAGGCACAGGGAGGGGCCGGGAGCCCAGAGCCCAATAAAGACATCCAGAAGCTGCTGAAGCCCTCCAGCTCAGGTGACCTATCCAGGGAGTGTTTCCACCACccagcaggggaggaggaggagggcggcCTGTCAGGGCACACTGCTAGCCTGCTGCACATCACAGAGAAGAGACAACCACTGAGTAGTGTGTCATCTTTGGAGGTGCACTTTGACCTCCTGGATCTGACTGAGCTGACTGACATGTCTGACCAGGAACTGGCTGAAGTCTTTGCTGACTCTGATGAGGAGAACCACGAGTCACCAGTTCCCACCAGCCTGTGCTGCCCAGAGGTGGATACATGCGCTCCCCCTCGTGGACACGCTGCAGAAAAGTTGAGCCCCCACGTGAAAGAAAGCACCACAGTGACTCGGACACTGCAGAGCCCTTAATGAAGCTGGAGAGGCCGAAGCAGCCGTGATTCTGATGTGAAAGAGCCAGAACGCAGAGAGAAAAAACCCAGAGCCAGATAGACACAGCCAGAGCGGGAACACAAAGCGGACCAAAAGGCCCCCATCTGCCATTGCGCACTCACATAACGTTTCATGGTGCTGAGTAGACGAGTTCAGGTTGAGCTCTGGACAACGTGCTATATACTCTTACTAAAGATGTTGAGGTGTGcaatacacacactctctcctcctctctttctctctctctctcacacacacacacacacacgtacatgaaAGGGGTTCTTAATGCACTCTGGACGGCCAGATGATTTTAAGCTTTGTTTTTGAATGACAGACAGGGTATGAGGTCAGCAGAATAACAGCACCTCCATCCTTACAGCCTCTCAGGATGGGTAATGTCCTGAACGGTGAGATTGGTTCCTAAATTGTGTTAGCCTGACCTTCCATGTGAAGTTTAGACACTGGGATTCACATTGAATTGCCAGGATATGATTGGAAACTTAAATCAATAAAGctgttcaaaataaaatatcttgTGAGGCTATTACTTAATGTGTTGACTTGAAAATGTgacagggttttttttgttgcctgcAATAAAGGTAACTTGATCAGTGGAAGTGGATGTCAGTGAGGCCACACTCTTTATATCCACCACACTTTCTCCATcttaatgaaatatgtgtgttgTTATTAAAATTGcctaaatgaaatgttttgcacttCTCTCACTGAATTGTATTGACAGTGCCCTCCAGAATTATTGGCATTTGGTGCAGATGACACAAAAGATAAACAGACCAAGTAGCAAACTATATGCAAAATACTTTTCCATAAtcaagtactttttttttcttttcaaaattagTTTAGAGAAATGTTTTCTAATTTctttatcatttaaaaaaagattgctGACAGAATTGCTGCTGCTTAGGTAATTCGAGTTTGTAGATGCATTAACTTGATGGGTGATAATTAAGGGAGAATTGTATCATTGTCAGGCAGACTTCCATAAGCTTTGCATGAAtgccaaaaacacaacaaagtgcCAACGATTTTGTAATCATCTTTTAAAAGAAGAATTAAACTCATGATGCAATATGTCACATCTTTGTAAGCAAAAGTTATAACTGATTACTTGATTTATTTATCTCACATTTAGCTTGTCTTTACCAGGAGTGCCAATAATTCTGAATGCTATGACACAATGGCTCAAAAGTGACTCTGGGATGatagaagaataaataaaagtctttaaaaagtg

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40650 lncRNA downstream 11144 28037134 ~ 28038207 (-) True G30586
TU40635 lncRNA downstream 30276 28012058 ~ 28019075 (-) False G30579
TU40639 lncRNA downstream 36728 28011000 ~ 28012623 (-) True G30579
TU40632 lncRNA downstream 47923 28001197 ~ 28001428 (-) True G30576
TU40602 lncRNA downstream 91727 27956247 ~ 27957624 (-) True G30551
TU40708 lncRNA upstream 151614 28225093 ~ 28225447 (-) True G30634
TU40721 lncRNA upstream 269221 28342700 ~ 28392518 (-) True G30644
TU40758 lncRNA upstream 374477 28447956 ~ 28550000 (-) True LOC120555801
TU40784 lncRNA upstream 595119 28668598 ~ 28668964 (-) True G30691
TU40860 lncRNA upstream 1066875 29140354 ~ 29140638 (-) True G30759
XM_039795623.1 mRNA downstream 178094 27863663 ~ 27871257 (-) True LOC120556190
XM_039795622.1 mRNA downstream 193764 27841587 ~ 27855587 (-) True kif7
XM_039795011.1 mRNA downstream 394943 27650685 ~ 27654408 (-) False si:ch211-122f10.4
XM_039795010.1 mRNA downstream 394945 27649504 ~ 27654406 (-) True si:ch211-122f10.4
XM_039795520.1 mRNA downstream 502775 27541636 ~ 27546576 (-) False gfod2
XM_039795268.1 mRNA upstream 19579 28093058 ~ 28097147 (-) True foxf1
XM_039796242.1 mRNA upstream 125631 28199110 ~ 28203878 (-) True irf8
XM_039795569.1 mRNA upstream 132247 28205726 ~ 28224206 (-) True dusp22a
XM_039794037.1 mRNA upstream 152145 28225624 ~ 28227538 (-) True LOC120555377
XM_039794036.1 mRNA upstream 152145 28225624 ~ 28227526 (-) False LOC120555377
TU40633 other downstream 46881 28001640 ~ 28002470 (-) True G30577
unassigned_transcript_142 other downstream 169138 27880131 ~ 27880213 (-) True trnal-uaa_2
TU40500 other downstream 277541 27766831 ~ 27771810 (-) True G30465
TU40446 other downstream 415729 27626893 ~ 27633622 (-) True G30422
TU40273 other downstream 733193 27310171 ~ 27316158 (-) True G30319
TU40786 other upstream 595712 28669191 ~ 28669868 (-) True G30693
XR_005638770.1 other upstream 696522 28770001 ~ 28846965 (-) False mafa
XR_005638769.1 other upstream 696522 28770001 ~ 28846965 (-) True mafa
XR_005638771.1 other upstream 702496 28775975 ~ 28846965 (-) False mafa
TU40901 other upstream 1184499 29257978 ~ 29269164 (-) False LOC120555471

Expression Profile