RNA id: TU41061


Basic Information

Item Value
RNA id TU41061
length 421
lncRNA type intronic
GC content 0.43
exon number 1
gene id G30905
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 29661668 ~ 29662088 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttcggtaatagcgcacgctatgcttccacagtttgcgtagtatttatcaaccctgacacccatcaggcaatcagcgtctttctccgcccactacaccgtaaattgcgctgtagcaaagcggtactggtgctatgatacggctgagtgcagactgcgatattcccacagctgatgctatgactgtttgaaatgatcctgatgccaatatttgtaatgtagcgaggagtttaacaactgctggaatgggatgtgaacgctgagtgggagattcaatttcatctttgatttcttccagtaactctaatattgcatggctgcttgatctgtaacgctaaatgatgttgtgttcactgacaaagtgtgattcttctgttaaaaatattttcagcctcgcctatgtcttcgtcttgctcaaattac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41058 lncRNA downstream 43813 29617366 ~ 29617855 (-) False LOC120556497
TU41054 lncRNA downstream 45293 29615440 ~ 29616375 (-) True G30898
TU41003 lncRNA downstream 264985 29386757 ~ 29396683 (-) False G30852
TU41002 lncRNA downstream 264985 29389963 ~ 29396683 (-) True G30852
TU41004 lncRNA downstream 271350 29386757 ~ 29390318 (-) False G30852
TU41059 lncRNA upstream 7720 29669808 ~ 29670355 (-) False LOC120556497
TU41149 lncRNA upstream 500392 30162480 ~ 30288433 (-) False G30969
TU41150 lncRNA upstream 616969 30279057 ~ 30288433 (-) True G30969
TU41201 lncRNA upstream 681328 30343416 ~ 30343902 (-) True G31013
TU41216 lncRNA upstream 746017 30408105 ~ 30410056 (-) True G31024
XM_039794374.1 mRNA downstream 109195 29541607 ~ 29552473 (-) True rnaset2
XM_039794373.1 mRNA downstream 122933 29522758 ~ 29538735 (-) True LOC120555582
XM_039794467.1 mRNA downstream 200433 29402035 ~ 29461235 (-) True elp4
XM_039794529.1 mRNA downstream 286068 29352248 ~ 29375600 (-) False rcn1
XM_039795576.1 mRNA upstream 504730 30166818 ~ 30178614 (-) True ddx21
XM_039794962.1 mRNA upstream 691340 30353428 ~ 30361232 (-) True tacr2
XM_039795713.1 mRNA upstream 780159 30442247 ~ 30446660 (-) True LOC120556252
XM_039795707.1 mRNA upstream 795152 30457240 ~ 30487984 (-) False rufy2
XM_039795708.1 mRNA upstream 795152 30457240 ~ 30486643 (-) True rufy2
XR_005638738.1 other downstream 200432 29402754 ~ 29461236 (-) False elp4
TU40901 other downstream 392504 29257978 ~ 29269164 (-) False LOC120555471
XR_005638770.1 other downstream 814703 28770001 ~ 28846965 (-) False mafa
TU41279 other upstream 868663 30530751 ~ 30532116 (-) False fam120b
TU41994 other upstream 3229411 32891499 ~ 32894405 (-) True G31602
TU42136 other upstream 3680159 33342247 ~ 33348090 (-) True wdr76
XR_005638776.1 other upstream 3776375 33438463 ~ 33449061 (-) False znf710b
TU42326 other upstream 4144848 33806936 ~ 33816370 (-) False LOC120555494

Expression Profile