RNA id: TU41150


Basic Information

Item Value
RNA id TU41150
length 1122
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G30969
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 30162480 ~ 30288433 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGATACTGTTGATATAAATCCTTTATTGTATTTCAAATGCAAATTAGACAACAGAGCATGTTGTAATGCATGCAAGTGCACAATACATATTTTGAATATGTTTCAGCTCACAGTGGTTACGATTGTGTGAATCCGTTCCTGAGGGGTTTGGGTGTGCAAGATTCTCTTGTTCAACTTTGCAGAACAGAAGTTTACCAAAATATGTTGCATAACCCTTCTGGCTAAGTGTAAAGTGTCAAAACATTTGAGACAAAGGGATCagataatataaatatgtattttcttttgtgtgtcttAAGGGAACACATGCCTCATAGCTCCAAAACAAAAATGGTTGGACCCACAGCTATACAGAATGAGCAATACGTGGACAAAGACAAACATCTTATTGCACTGGTATTACAATTATTTGAGCATGTTCTAAATTTTATAGTAAAAAGCATATTCCAACTTACACATCTTTTCCACAAGAAAATGCAAATACAGGTCACTGCCAGCTTAAACTAAATTAAAGTGTGTATATGTCTCAATAATGCAGACCATTCTTTTACTTTAGTAGCTACTTTTCCATTGTTTACAGTTGTACTTCTGCCCCTGAAGACAGTAATTCCTACCAATAGCACATTTGTCAATGTCTGAGCAACATGTTTTTAAACCACCAGGTGGTGATGCAATATTTGTTTTACTATTTGAATAGACAGAGAAGAAATGAAATAGATGCTAgccttgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagacagagacagagggggtGTATAcccctttattttcttttacttgTGATTTCACTTTGCTTAGGCTACTTCAAGTTTTCACAAGGTTTAacagaaaaaggagagaaatacaACTActgctacaacaacaacaacaacaacaacaacaacaacagcatcaCCTTCTGTGGGTAACACAAGTAATTATTAATGTATACTGTATCTGTCCTGGGAGTCACTGCAGGTCCCAAACCCCTGTTACGGTTAAAAAGAACTCCAAACTCTACACAGCaacagaccatagactgtataaaacagcAACAGACCCATCTCCTGAGATATAGCACATTACATTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41059 lncRNA downstream 608702 29669808 ~ 29670355 (-) False LOC120556497
TU41061 lncRNA downstream 616969 29661668 ~ 29662088 (-) True G30905
TU41058 lncRNA downstream 661202 29617366 ~ 29617855 (-) False LOC120556497
TU41054 lncRNA downstream 662682 29615440 ~ 29616375 (-) True G30898
TU41002 lncRNA downstream 882374 29389963 ~ 29396683 (-) True G30852
TU41201 lncRNA upstream 54983 30343416 ~ 30343902 (-) True G31013
TU41216 lncRNA upstream 119672 30408105 ~ 30410056 (-) True G31024
TU41220 lncRNA upstream 133257 30421690 ~ 30424323 (-) True G31027
TU41221 lncRNA upstream 134509 30422942 ~ 30424323 (-) False G31027
TU41361 lncRNA upstream 281454 30569887 ~ 30585456 (-) False G31110
XM_039795576.1 mRNA downstream 100443 30166818 ~ 30178614 (-) True ddx21
XM_039796142.1 mRNA downstream 313310 29617320 ~ 29965747 (-) True LOC120556497
XM_039794374.1 mRNA downstream 726584 29541607 ~ 29552473 (-) True rnaset2
XM_039794373.1 mRNA downstream 740322 29522758 ~ 29538735 (-) True LOC120555582
XM_039794467.1 mRNA downstream 817822 29402035 ~ 29461235 (-) True elp4
XM_039794962.1 mRNA upstream 64995 30353428 ~ 30361232 (-) True tacr2
XM_039795713.1 mRNA upstream 153814 30442247 ~ 30446660 (-) True LOC120556252
XM_039795707.1 mRNA upstream 168807 30457240 ~ 30487984 (-) False rufy2
XM_039795708.1 mRNA upstream 168807 30457240 ~ 30486643 (-) True rufy2
XM_039795706.1 mRNA upstream 168807 30457240 ~ 30480833 (-) False rufy2
XR_005638738.1 other downstream 817821 29402754 ~ 29461236 (-) False elp4
TU40901 other downstream 1009893 29257978 ~ 29269164 (-) False LOC120555471
XR_005638770.1 other downstream 1432092 28770001 ~ 28846965 (-) False mafa
TU41279 other upstream 242318 30530751 ~ 30532116 (-) False fam120b
TU41994 other upstream 2603066 32891499 ~ 32894405 (-) True G31602
TU42136 other upstream 3053814 33342247 ~ 33348090 (-) True wdr76
XR_005638776.1 other upstream 3150030 33438463 ~ 33449061 (-) False znf710b
TU42326 other upstream 3518503 33806936 ~ 33816370 (-) False LOC120555494

Expression Profile