RNA id: TU41221



Basic Information


Item Value
RNA id TU41221
length 929
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G31027
representative False

Chromosome Information


Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 30421690 ~ 30424323 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TTGTGATGATTTTTGAGGACATAATAATGCCCCCTTGCTTTATTTAATGTCACCTGGAGAAACATACACTATTACAACTTGCTGAGTATGATACAGCAAAACTATATAGCAACAACTCATAGAAAAAATGGCTTGTacaaaaagtttttattttatacattttctttgtccATTCTACCTAGGAATTTATCAAATAAATAACGGAGCGAATATAATAATTTCTGCAGTCTAGAGAGTCTCTGCGTGAGTCTTCATATGAATAATTAAATGGGAGCGCCGAATGAATCTTTTTCCACAAGCAGTGCAACTATATGGCCTCTCCCCTGAATGAGTCTTCATGTGGCGTGTTAAATTAGACTGCGCACTGAATTTCATATTACATACAATGCAAATGTATGGCTTCTCACCAGTGTGAATTATTGTATGCTTAATGAGATCCGCTTTCTCTCTAAAACTTTTTCCACAGTCAGTACAGACGTGAGGCTTCTCTCCCGTGTGGATTCGAATGTGGGCATTCATGTTTCCAACTTGTGTGAAACCTCTGCCACAGAAACTACATGTGTGCGGTTTCTGTCCGGAGTGAGAGTTCATGGGCTCCTGGTCATCCTCACATAAGCCAGTCTTCTTCTCACAGCGATACTGCTCTGAGGGAGCGTCCTCTTCCTGGACAGAAAGCTGCAGGGGGGCTTCACAGTATCACACATGAGAAAAGAAATGTAAGCCTTAGTTTCATCATATATTTTGATTTGCAAATATTTAGCAGAGAGCGAGACAAGGCAGGTAGAACATGAAAATGTGTCCCAGCATATACAAATCTCAGAATTTTGCATGGTTTTGTTATGATGGGTAGTCTGCTCATGAAAAGATGGGAACAGCACCAGTGTAACTAGTCTCTTTcacaatacaacacatacaATGGTGCTTATCTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU41216 lncRNA downstream 12886 30408105 ~ 30410056 (-) True G31024
TU41201 lncRNA downstream 79040 30343416 ~ 30343902 (-) True G31013
TU41149 lncRNA downstream 134509 30162480 ~ 30288433 (-) False G30969
TU41150 lncRNA downstream 134509 30279057 ~ 30288433 (-) True G30969
TU41059 lncRNA downstream 752587 29669808 ~ 29670355 (-) False LOC120556497
TU41361 lncRNA upstream 145564 30569887 ~ 30585456 (-) False G31110
TU41366 lncRNA upstream 153963 30578286 ~ 30579304 (-) True G31115
TU41360 lncRNA upstream 159013 30583336 ~ 30585456 (-) True G31110
TU41405 lncRNA upstream 275080 30699403 ~ 30726354 (-) True G31146
TU41409 lncRNA upstream 345260 30769583 ~ 30769809 (-) True G31150
XM_039794962.1 mRNA downstream 61710 30353428 ~ 30361232 (-) True tacr2
XM_039795576.1 mRNA downstream 244328 30166818 ~ 30178614 (-) True ddx21
XM_039796142.1 mRNA downstream 457195 29617320 ~ 29965747 (-) True LOC120556497
XM_039794374.1 mRNA downstream 870469 29541607 ~ 29552473 (-) True rnaset2
XM_039794373.1 mRNA downstream 884207 29522758 ~ 29538735 (-) True LOC120555582
XM_039795713.1 mRNA upstream 17924 30442247 ~ 30446660 (-) True LOC120556252
XM_039795707.1 mRNA upstream 32917 30457240 ~ 30487984 (-) False rufy2
XM_039795708.1 mRNA upstream 32917 30457240 ~ 30486643 (-) True rufy2
XM_039795706.1 mRNA upstream 32917 30457240 ~ 30480833 (-) False rufy2
XM_039795709.1 mRNA upstream 39675 30463998 ~ 30480831 (-) False rufy2
XR_005638738.1 other downstream 961706 29402754 ~ 29461236 (-) False elp4
TU40901 other downstream 1153778 29257978 ~ 29269164 (-) False LOC120555471
XR_005638770.1 other downstream 1575977 28770001 ~ 28846965 (-) False mafa
TU41279 other upstream 106428 30530751 ~ 30532116 (-) False fam120b
TU41994 other upstream 2467176 32891499 ~ 32894405 (-) True G31602
TU42136 other upstream 2917924 33342247 ~ 33348090 (-) True wdr76
XR_005638776.1 other upstream 3014140 33438463 ~ 33449061 (-) False znf710b
TU42326 other upstream 3382613 33806936 ~ 33816370 (-) False LOC120555494

Expression Profile