RNA id: TU41360


Basic Information

Item Value
RNA id TU41360
length 2020
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G31110
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 30569887 ~ 30585456 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTATGGTCGTTTTTAAAGAAACACAGGATTACGGTTGtctcattatttaaaaaaatgtatttgtatgtacTTACATACTGGTGTCAAAAGAGTATGCACCAAAAATGTCACATGACTCacaattacaaagaaaaagcattttcttttcttcaattATAAGTATTGAAAAAACTATGTACAGAAATAAGGGCATGGTGACAAGATAGTACACTAGAAACAAATTTACGGTCACAATATGGTTTAAATGATGCTTctgcaaaaaaatgaaaataaattcatACACTGCCTTGGTGCTCTGAACTTCAAATTGTATTTCCACCCAAAAAGTAACCTTGTGCATCCTCTCCACTGCCCAGCATCAGGGAGTTTTCAGAGCGTGCTCACAAAATGACTTCtcgctgttttttcttttaataactgcCAATAACTAATACATcaaaaatgaaaagttaaacACTTGAGTGGAAATACTTAGTTTACTTAAAACACATGTCCTAGAGATGATCTTAAAAAGATGTTACATTGGAAACGGGGGACAGACAGGAAAAGCAAATGGGGTGGAGACGAGCTGTGTGTGGAGGGCCAGTCCAGAGCTTTAATCATCCCGTCTCTCTGGATTGACACAGAGACATAAAAGGCAGCGAGTGTTTTATGTCTCGTCTCTCTACGAGTTTCCCTGCTATCAGATCTTACAGATGAAAAGTACACTAGCTCCCAAAACCCTGGCATCTCTTCTCAGTCAGGAAATGTACAGATTTTGATCAAGACTAGACACCAAGCAGGGATGAAAAAGAAGGATGATGGTGATTGGGCTGTTATGTGACCAGCAagactggggaaaaaaaaagaaactggacTAGTGCCCCAAATCCTTGGGCCCCTCTTACTAGAGTCTAACTGTCACTCACACAAACTGCCCCATTCAAACTCAGGGTGGGGGTATGGGAGAGGAACCTGACACAGGTAAGCAACTCATTCAGTGCCACACTGGACTAGCATGTGCACCCTACTGCTTCTTGAATCTTCAATTTGGGCTACAAAAGACAATATCCTCCTCTCATTCAATCACTTTTTCTACAGTTAACCTTTTACGCAATGCAAATCTATCGGCAGCCATTTTGGTTCCCTTCTCTGGGTCTAGTCAATGATTAGGAAATAATGATGGTTTTAATGGCACTTTGAGATACAATGAATGCCTTGTTATTtggacacaacacacagaaagcATTGTGCAATTTCATATTGGAAAAGTAACATGCACATCATATATATTGCAAAACTGCAATGAAAATGCACGTGTCACGCTGTAAAATGTGAACAGCAATCAGACACAGGTCAACATGAGAGCTATCCTCAAACTTCCACTAAAACATAATTGTGAAACGGTCATGTGGATAAAGATTTTAATGACAGAGTGCAGTGCATGTCCGGTAGACCGGTTCGCGCTGCATCTGCCTTCTAGTTACGAAAACTTAGAAAACGATGTGCTATTCAGCATGCCTGTGAATCTGCTGCTTCTGAATTTAAGAAGTAAAAGTGTGTCCAGCTTCTTTCCAGCGAGACCGAACGAAAAGAAACAACTGGAGGGGGTGTTAAAGTAATCTGCCTAAAaccgaggaaaaaaaaaaaaaactatactgATGATCTTAGTTCAGGTCTTCGAGCATATGTGTAGGAATTGTAATTTCTGTTTACGGATGTCTGTGAGGTAAGGATTACATTTAGAACAGAATGCGTCTCTGGTGTATCTGGTGTAGCCCGGGACCAGCTGCTCCCTCTGGGACAGTTTCTCTTTGCCTTTAGTCACTTTTAGCCTTTTTGCTGTCGTTTCCGTTCTCCTCCGGCTTGGCTCCTTCTGCCTCCTCCGGGTGCTTCCTCTTCTTCGTGTCGTCTGGCTGATGGGACGGGTGTGGCCGGAGCGTGACGATGATGCAGGTCATGTTGTCACATCCTGTCCCGTCTCCAGATGTGTCGGGGGCCAAACAGTGGTCCAACAGCTGCGAGGAGGACATATGGGAT

Function

GO:

id name namespace
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41366 lncRNA downstream 4032 30578286 ~ 30579304 (-) True G31115
TU41220 lncRNA downstream 159013 30421690 ~ 30424323 (-) True G31027
TU41221 lncRNA downstream 159013 30422942 ~ 30424323 (-) False G31027
TU41216 lncRNA downstream 173280 30408105 ~ 30410056 (-) True G31024
TU41201 lncRNA downstream 239434 30343416 ~ 30343902 (-) True G31013
TU41405 lncRNA upstream 113947 30699403 ~ 30726354 (-) True G31146
TU41409 lncRNA upstream 184127 30769583 ~ 30769809 (-) True G31150
TU41416 lncRNA upstream 196954 30782410 ~ 30785228 (-) True G31155
TU41568 lncRNA upstream 456092 31041548 ~ 31050491 (-) True G31274
TU41572 lncRNA upstream 517352 31102808 ~ 31103063 (-) True G31278
XM_039796243.1 mRNA downstream 14762 30566790 ~ 30568574 (-) True mis12
XM_039795670.1 mRNA downstream 51194 30515255 ~ 30532142 (-) True fam120b
XM_039795715.1 mRNA downstream 91862 30489323 ~ 30491474 (-) True LOC120556254
XM_039795706.1 mRNA downstream 102503 30457240 ~ 30480833 (-) False rufy2
XM_039794793.1 mRNA upstream 21191 30606647 ~ 30610958 (-) True rhoua
XM_039794792.1 mRNA upstream 33401 30618857 ~ 30626072 (-) False LOC120555751
XM_039794791.1 mRNA upstream 33403 30618859 ~ 30627325 (-) True LOC120555751
XM_039794794.1 mRNA upstream 46255 30631711 ~ 30634639 (-) True psmb1
XM_039794795.1 mRNA upstream 49717 30635173 ~ 30646025 (-) True phf10
TU41279 other downstream 51220 30530751 ~ 30532116 (-) False fam120b
XR_005638738.1 other downstream 1122100 29402754 ~ 29461236 (-) False elp4
TU40901 other downstream 1314172 29257978 ~ 29269164 (-) False LOC120555471
XR_005638769.1 other downstream 1736371 28770001 ~ 28846965 (-) True mafa
TU41994 other upstream 2306043 32891499 ~ 32894405 (-) True G31602
TU42136 other upstream 2756791 33342247 ~ 33348090 (-) True wdr76
XR_005638776.1 other upstream 2853007 33438463 ~ 33449061 (-) False znf710b
TU42326 other upstream 3221480 33806936 ~ 33816370 (-) False LOC120555494
TU42327 other upstream 3221480 33806936 ~ 33816370 (-) False LOC120555494

Expression Profile