RNA id: TCONS_00007133


Basic Information

Item Value
RNA id TCONS_00007133
length 750
lncRNA type sense_intronic
GC content 0.39
exon number 5
gene id XLOC_003672
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40897326 ~ 40899889 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agccacagttctctatacaataacacaagaccctgtgacggtggctgattagagacggatggtgtatttccagagttggtgaaatgaccaagcacaccttcttggtcatatgtggtgataataatgaagattatatttggacctgaaacatctgctagactccaggatagctgggagagtcaagttgtggatcatcatgaagattttcaaaagtcatgctggagtcttgaagagttcttagatgagcatcaccctatatccgtgcaccaggaaccaccagacgagcgatcagcagctactacattgtcatggataaaaaggtcatcctgtggctgggaagcacttcattcacaggacatgcttgatgagatttcctagctccagtttgttttcacacaagtttacagcatttataccttcatttaaactgctgtgtttgatatggaggaccaaggaaacaccaggggcctcatgtacgaagacttgcgtggaaatcttactaaaacattgcgtacgcacgaagctgtaaatgtgctgacgatatattgaactttcaaattgctctgatgaaacatcaagtttggaccaaaggactaaaacagcctttttgagcactggtcatacatattttgttaatACTGTTgatactaataaaacatttaaagcatatttgacattgttgcattttaaaaactgaatgaattgttgaagtggtgaatgttttcaaataaaatgttttttcttttgtaa

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0038092 nodal signaling pathway biological_process
GO:0032924 activin receptor signaling pathway biological_process
GO:0032925 regulation of activin receptor signaling pathway biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:1900107 regulation of nodal signaling pathway biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000173104

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008675 lncRNA upstream 31784 40864955 ~ 40865542 (+) True XLOC_003669
TCONS_00007123 lncRNA upstream 294239 40597563 ~ 40603087 (+) True XLOC_003664
TCONS_00008674 lncRNA upstream 463246 40220055 ~ 40434080 (+) True XLOC_003662
TCONS_00008673 lncRNA upstream 780680 40111481 ~ 40116646 (+) True XLOC_003659
TCONS_00007113 lncRNA upstream 898528 39993997 ~ 39998798 (+) True XLOC_003657
TCONS_00008678 lncRNA downstream 2229 40902118 ~ 40932395 (+) False XLOC_003671
TCONS_00008679 lncRNA downstream 2261 40902150 ~ 40950147 (+) False XLOC_003671
TCONS_00008680 lncRNA downstream 4435 40904324 ~ 40932395 (+) False XLOC_003671
TCONS_00008420 lncRNA downstream 44878 40944767 ~ 40949105 (+) False XLOC_003671
TCONS_00008681 lncRNA downstream 48583 40948472 ~ 40952880 (+) False XLOC_003671
TCONS_00007129 mRNA upstream 49711 40812590 ~ 40847615 (+) False XLOC_003668
TCONS_00007130 mRNA upstream 53300 40831620 ~ 40844026 (+) True XLOC_003668
TCONS_00007125 mRNA upstream 223256 40649412 ~ 40674070 (+) False XLOC_003667
TCONS_00007126 mRNA upstream 223256 40649413 ~ 40674070 (+) False XLOC_003667
TCONS_00007128 mRNA upstream 234088 40657612 ~ 40663238 (+) True XLOC_003667
TCONS_00007134 mRNA downstream 164933 41064822 ~ 41067789 (+) True XLOC_003673
TCONS_00007135 mRNA downstream 189685 41089574 ~ 41104643 (+) False XLOC_003674
TCONS_00007136 mRNA downstream 190551 41090440 ~ 41105632 (+) True XLOC_003674
TCONS_00007138 mRNA downstream 235166 41135055 ~ 41157954 (+) False XLOC_003675
TCONS_00007143 mRNA downstream 342755 41242644 ~ 41372948 (+) False XLOC_003678
TCONS_00007131 other upstream 8032 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007127 other upstream 241455 40649471 ~ 40655871 (+) False XLOC_003667
TCONS_00007097 other upstream 2093588 38803611 ~ 38803738 (+) True XLOC_003642
TCONS_00007094 other upstream 2308760 38588451 ~ 38588566 (+) True XLOC_003640
TCONS_00007082 other upstream 3247298 37647553 ~ 37650028 (+) True XLOC_003630
TCONS_00007137 other downstream 210780 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other downstream 235720 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007149 other downstream 565218 41465107 ~ 41465236 (+) True XLOC_003680
TCONS_00007172 other downstream 1725482 42625371 ~ 42625487 (+) True XLOC_003703
TCONS_00007182 other downstream 2144937 43044826 ~ 43044949 (+) True XLOC_003709

Expression Profile

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