RNA id: TU41361



Basic Information


Item Value
RNA id TU41361
length 903
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G31110
representative False

Chromosome Information


Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 30569887 ~ 30585456 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GCTATGGTCGTTTTTAAAGAAACACAGGATTACGGTTGtctcattatttaaaaaaatgtatttgtatgtacTTACATACTGGTGTCAAAAGAGTATGCACCAAAAATGTCACATGACTCacaattacaaagaaaaagcattttcttttcttcaattATAAGTATTGAAAAAACTATGTACAGAAATAAGGGCATGGTGACAAGATAGTACACTAGAAACAAATTTACGGTCACAATATGGTTTAAATGATGCTTctgcaaaaaaatgaaaataaattcatACACTGCCTTGGTGCTCTGAACTTCAAATTGTATTTCCACCCAAAAAGTAACCTTGTGCATCCTCTCCACTGCCCAGCATCAGGGAGTTTTCAGAGCGTGCTCACAAAATGACTTCtcgctgttttttcttttaataactgcCAATAACTAATACATcaaaaatgaaaagttaaacACTTGAGTGGAAATACTTAGTTTACTTAAAACACATGTCCTAGAGATGATCTTAAAAAGATGTTACATTGGAAACGGGGGACAGACAGGAAAAGCAAATGGGGTGGAGACGAGCTGTGTGTGGAGGGCCAGTCCAGAGCTTTAATCATCCCGTCTCTCTGGATTGACACAGAGACATAAAAGGCAGCGAGTGTTTTATGTCTCGTCTCTCTACGAGTTTCCCTGCTATCAGATCTTACAGATGAAAAGTACACTAGCTCCCAAAACCCTGGCATCTCTTCTCAGTCAGGAAATGTACAGATTTTGATCAAGACTAGACACCAAGCAGGGATGAAAAAGAAGGATGATGGTGATTGGGCTGTTATGTGACCAGCAagactggggaaaaaaaaagaaaaaaccctTATCCTCACTTGTGAATGggtgatatatatatatatatatatac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU41220 lncRNA downstream 145564 30421690 ~ 30424323 (-) True G31027
TU41221 lncRNA downstream 145564 30422942 ~ 30424323 (-) False G31027
TU41216 lncRNA downstream 159831 30408105 ~ 30410056 (-) True G31024
TU41201 lncRNA downstream 225985 30343416 ~ 30343902 (-) True G31013
TU41149 lncRNA downstream 281454 30162480 ~ 30288433 (-) False G30969
TU41405 lncRNA upstream 113947 30699403 ~ 30726354 (-) True G31146
TU41409 lncRNA upstream 184127 30769583 ~ 30769809 (-) True G31150
TU41416 lncRNA upstream 196954 30782410 ~ 30785228 (-) True G31155
TU41568 lncRNA upstream 456092 31041548 ~ 31050491 (-) True G31274
TU41572 lncRNA upstream 517352 31102808 ~ 31103063 (-) True G31278
XM_039796243.1 mRNA downstream 1313 30566790 ~ 30568574 (-) True mis12
XM_039795670.1 mRNA downstream 37745 30515255 ~ 30532142 (-) True fam120b
XM_039795715.1 mRNA downstream 78413 30489323 ~ 30491474 (-) True LOC120556254
XM_039795707.1 mRNA downstream 81903 30457240 ~ 30487984 (-) False rufy2
XM_039795708.1 mRNA downstream 83244 30457240 ~ 30486643 (-) True rufy2
XM_039794793.1 mRNA upstream 21191 30606647 ~ 30610958 (-) True rhoua
XM_039794792.1 mRNA upstream 33401 30618857 ~ 30626072 (-) False LOC120555751
XM_039794791.1 mRNA upstream 33403 30618859 ~ 30627325 (-) True LOC120555751
XM_039794794.1 mRNA upstream 46255 30631711 ~ 30634639 (-) True psmb1
XM_039794795.1 mRNA upstream 49717 30635173 ~ 30646025 (-) True phf10
TU41279 other downstream 37771 30530751 ~ 30532116 (-) False fam120b
XR_005638738.1 other downstream 1108651 29402754 ~ 29461236 (-) False elp4
TU40901 other downstream 1300723 29257978 ~ 29269164 (-) False LOC120555471
XR_005638770.1 other downstream 1722922 28770001 ~ 28846965 (-) False mafa
TU41994 other upstream 2306043 32891499 ~ 32894405 (-) True G31602
TU42136 other upstream 2756791 33342247 ~ 33348090 (-) True wdr76
XR_005638776.1 other upstream 2853007 33438463 ~ 33449061 (-) False znf710b
TU42326 other upstream 3221480 33806936 ~ 33816370 (-) False LOC120555494
TU42327 other upstream 3221480 33806936 ~ 33816370 (-) False LOC120555494

Expression Profile