RNA id: TU41405



Basic Information


Item Value
RNA id TU41405
length 785
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G31146
representative True

Chromosome Information


Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 30699403 ~ 30726354 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ttaaaaaaaaaaaaaaaaaaaaaaaaaaagcaacatagAAAAGATGTAAGTATAATTCACGCAATCCATATTTTCTTCAGTAATTCAATtaaatgattttaaaataataaatatacaatatTTTACACATGATTTGTCAGGGTTACAGTGACAGGTCTTTCTGACGAGGAAGCACTTTTCAAACACAGTGCCCACTTCCTGTATTGACGTCATCAGAGTGTCAGAAGGTCCTCACACAGTTTCCCTGTGTGCCTCCTGAGAACAGCTACTATTCCTCCAGTCAGCCATGTGCTGTATGTTTAAGCTACAGGGTGTAACCAAAGTGATCCACCTGTAGATGGCTTTGTGTTTGCAACAATTATTAACCAGTTACTGTGTGTATAGCAGGCTGTGCAACTGTGTCGTTAACAAAAAACTGtcaggagacaaaaaaaaactaaattttttAGTTAGTAGGTTATCCACAAGCTGTCCCCattcaaaagcagaaattacatataaaaacacatttttccacAGAAAGAACATTTATTCTGATctaattaaattgaaatcttaACTAAAAGGTTGAGAGTGCTTGTTGTGACAGCTCAAACAGTGTACTTGTCCTCTCCTTGCCTCTGTGCTTTGTGGTAGTGGGTGTAGCTGCTGTACAGCTCATTGAACACCTCCCTGACTCCCATCTGCAGTCCGGCCGTCAGAAACTTAATATCCTGCTCCGTACACAGGTCCAGTATCCGATAGATCCCCTCTGTTAGATGCAGCTTAACGTCTGGTCGCAAAGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU41361 lncRNA downstream 113947 30569887 ~ 30585456 (-) False G31110
TU41360 lncRNA downstream 113947 30583336 ~ 30585456 (-) True G31110
TU41366 lncRNA downstream 120099 30578286 ~ 30579304 (-) True G31115
TU41220 lncRNA downstream 275080 30421690 ~ 30424323 (-) True G31027
TU41221 lncRNA downstream 275080 30422942 ~ 30424323 (-) False G31027
TU41409 lncRNA upstream 43229 30769583 ~ 30769809 (-) True G31150
TU41416 lncRNA upstream 56056 30782410 ~ 30785228 (-) True G31155
TU41568 lncRNA upstream 315194 31041548 ~ 31050491 (-) True G31274
TU41572 lncRNA upstream 376454 31102808 ~ 31103063 (-) True G31278
TU41573 lncRNA upstream 377416 31103770 ~ 31105588 (-) True G31279
XM_039794902.1 mRNA downstream 14204 30669879 ~ 30685199 (-) True abcb10
XM_039794904.1 mRNA downstream 34143 30661186 ~ 30665260 (-) True acta1b
XM_039796039.1 mRNA downstream 39442 30654191 ~ 30659961 (-) False ccsapb
XM_039796038.1 mRNA downstream 39452 30654191 ~ 30659951 (-) False ccsapb
XM_039796040.1 mRNA downstream 39553 30654191 ~ 30659850 (-) True ccsapb
XM_039794102.1 mRNA upstream 89042 30815396 ~ 30827693 (-) False LOC120555418
XM_039794101.1 mRNA upstream 89042 30815396 ~ 30827693 (-) True LOC120555418
XM_039794024.1 mRNA upstream 128820 30855174 ~ 30867292 (-) True adpgk2
XM_039794025.1 mRNA upstream 141420 30867774 ~ 30876711 (-) True ctsba
XM_039794026.1 mRNA upstream 152587 30878941 ~ 30893299 (-) True xkr5b
TU41279 other downstream 167287 30530751 ~ 30532116 (-) False fam120b
XR_005638738.1 other downstream 1238167 29402754 ~ 29461236 (-) False elp4
TU40901 other downstream 1430239 29257978 ~ 29269164 (-) False LOC120555471
XR_005638769.1 other downstream 1852438 28770001 ~ 28846965 (-) True mafa
TU41994 other upstream 2165145 32891499 ~ 32894405 (-) True G31602
TU42136 other upstream 2615893 33342247 ~ 33348090 (-) True wdr76
XR_005638776.1 other upstream 2712109 33438463 ~ 33449061 (-) False znf710b
TU42326 other upstream 3080582 33806936 ~ 33816370 (-) False LOC120555494
TU42327 other upstream 3080582 33806936 ~ 33816370 (-) False LOC120555494

Expression Profile